Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13570 132 / 4e-33 F-box/RNI-like superfamily protein (.1) AT2G04230 65 / 1e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT3G59200 63 / 3e-10 F-box/RNI-like superfamily protein (.1) AT3G58880 61 / 2e-09 F-box/RNI-like superfamily protein (.1) AT1G80470 61 / 2e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G49610 60 / 2e-09 F-box family protein (.1) AT5G54820 60 / 3e-09 F-box/RNI-like superfamily protein (.1) AT1G66310 60 / 4e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G49150 60 / 5e-09 F-box/RNI-like superfamily protein (.1) AT1G66290 59 / 5e-09 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004852 [exp] 179 / 1e-48 AT1G13570 147 / 6e-39 F-box/RNI-like superfamily protein (.1) Lus10011048 [exp] 176 / 2e-48 AT1G13570 127 / 2e-32 F-box/RNI-like superfamily protein (.1) Lus10004851 [exp] 153 / 3e-40 AT1G13570 139 / 7e-37 F-box/RNI-like superfamily protein (.1) Lus10029077 [exp] 131 / 8e-33 AT1G13570 82 / 1e-16 F-box/RNI-like superfamily protein (.1) Lus10013071 [exp] 120 / 5e-28 AT1G65440 275 / 7e-79 global transcription factor group B1 (.1.2.3) Lus10034414 [exp] 117 / 5e-28 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1) Lus10034415 [exp] 113 / 1e-27 AT1G13570 358 / 1e-123 F-box/RNI-like superfamily protein (.1) Lus10019144 [exp] 115 / 3e-27 AT1G13570 482 / 6e-170 F-box/RNI-like superfamily protein (.1) Lus10003016 [exp] 104 / 6e-24 AT1G13570 81 / 1e-16 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G134200 [exp] 121 / 3e-29 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.014G039700 [exp] 115 / 2e-27 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 108 / 4e-25 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.017G107600 [exp] 91 / 3e-19 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.008G110400 [exp] 88 / 4e-18 AT1G13570 419 / 2e-144 F-box/RNI-like superfamily protein (.1) Potri.011G098700 [exp] 65 / 9e-11 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Potri.014G163866 [exp] 61 / 1e-09 AT4G14103 79 / 2e-16 F-box/RNI-like superfamily protein (.1.2) Potri.011G121400 [exp] 59 / 8e-09 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.015G002100 [exp] 57 / 1e-08 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.011G121500 [exp] 57 / 2e-08 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10034418 pacid=23175831 polypeptide=Lus10034418 locus=Lus10034418.g ID=Lus10034418.BGIv1.0 annot-version=v1.0 ATGACTCGTCCAACTCTCGCATTCGATGAAAGTTTCCGGACCCGATTGCCATATCATCAGTACTACCATACTAAGGATCCTAATACTAACGACAGACTCA TTTTGAATGTGTTCAAAGTGCTCTGTTTTCACCAAGGACCCTTGAGGGAGGTTTCACTTTCCAACTCTTGTTTAAGAGACTATCCTGCTGAAGTTGATCA AATCTTACTTTTCTTGGTTGGAAAATGTATCCAGAGTTTATGCATAAAGATTGATGGCTACAAGGTCTCAAGTTGTTTGTTCTCCTTCACAAAGCTCAAG ATGTTGCAACTGTCTGGCTGCGTATTCACATCTCCACATATTTCGTTCGAGGAATTCGGTCTGCTTACTCAACTTCATCTTACATCGGTCAAATTTCAGA ATGTTGATGGTGTTTCTCTCGTCATCAAATGCTCTTCGCTTGAAGTTTTTAATTTGATTGATTCCGGTCGTTCTTCCTACAATGTTGCTATATCGATAGA AGCACCTAACCTTTGGCATTTCGGACTCGTGGGGATCTTCAGATCTAGCATTCAGGTCAACCTCGCTCCACTTCTTGTGAGTGTTTCTTTAGCTCCATAT ACAAGATTTGCTGAAAATCCTACTACCACCGACGTCATTAAGTTTTTGGATGGTTGTCCCATACTATCACAACTCAGTATAACAATTGATCTCATCAAGG ATGACCCTAAAACCAAGAGAATTGTTAGCGACGGAATCAGTTCTCTGCCGGACTCTATAATTGAGCACATCTTGGCACTGTTGCCATTAAGAGAAGCTGC CAAGACCAGTGTATTGTCCAAGGCATGGAAGCACAAATGGGTGACCCGTCCAGCCCTTGCATTTGACGACAGTTTTTGGACTCCATTCCCAGTTGTTGAG ACATCTTACCAATATTTTCATTCCAACGATTCTAATAGCATTGACAGACTCGTTGCAAATGTGTTCAAAGTTCTCTGTTTTCACAGAGGACCCTTGAGGG AGTTGTCACTTTCCAACTCTCATTTAAGAGGCTATCCTGCTGAGGTTGATCAAATCTTACTTTCCTTGGTTGAGAAATGTATCCAGCGTTTATACATAAA TATTGGTGGCTACAAGGTCTCAAGTCGTTTGTTCTCATTCACAAAGCTCAAGATGTTGGAACTGTCTGGCTGCGTATTCACATCTCCGCATATTTCGTTC GAGGAGTTCGACCTGCTTACTCATCTCCATCTTACGTCGGTCAAATTTCAGAATGTTGATGGTGTTTCTCTCGTCATCAAATGCTCTTTGCTTCAAGTTT TTACTTTGACTGCTTGCGGTGCTTCTTCCTACAATGTTGCTATATCGATCGAAGCACCTAACCTTCAGGATTTCCAACTCATTGGCAGCTTCGGATCTAG TCTCCGGGTCAACCTCGCTCCGCTTCTCACGACTGTTTATGTACACCCACATGTAAGATATGTTGATAATCCTAACAGTCAACCAACTACCACAGACTTC ATTAAGTTATTGGATGCTTGTCCAGCACTACAACGGCTCGGCACAACAACTGATCTCCTCAGGGGCTTTGGGATGAGTAATCGCCTGCCTCAGCAAGTGC CGCTAAGGGTACTAGTGTTGCAAGAAGTGTGTCTCAGTGACCCACATGATGTCCGACTTCTTGATGCCTTACTCCACCTACTCCCTCGCTTGCAAGAAGT TATTATCATTATGAGAGCAGGGCAAAATTTGGAAGACAACCAGAGGATCGCAGAAACAGAGTACGAGGACTCGAAAAGCAAAGCAAATAGGCTGCGGAGC GTGACATTGCTACAGTTGTTGGGTACAAAGTTTGAGATGGGTTTTATTCGATGGTTATTGACCACTTCGCCTGAGCTTGAGAACATGACGATTGAGTTTT CGATAAAATCGTTACCAACTGACCAGATCCTGTGTTATAAAGAGTTGAATGGATTTCAGCGGGCATCATCCACCAGAGCACAAATCACGATCAAGTGA
AA sequence Show only first row Show all	>Lus10034418 pacid=23175831 polypeptide=Lus10034418 locus=Lus10034418.g ID=Lus10034418.BGIv1.0 annot-version=v1.0 MTRPTLAFDESFRTRLPYHQYYHTKDPNTNDRLILNVFKVLCFHQGPLREVSLSNSCLRDYPAEVDQILLFLVGKCIQSLCIKIDGYKVSSCLFSFTKLK MLQLSGCVFTSPHISFEEFGLLTQLHLTSVKFQNVDGVSLVIKCSSLEVFNLIDSGRSSYNVAISIEAPNLWHFGLVGIFRSSIQVNLAPLLVSVSLAPY TRFAENPTTTDVIKFLDGCPILSQLSITIDLIKDDPKTKRIVSDGISSLPDSIIEHILALLPLREAAKTSVLSKAWKHKWVTRPALAFDDSFWTPFPVVE TSYQYFHSNDSNSIDRLVANVFKVLCFHRGPLRELSLSNSHLRGYPAEVDQILLSLVEKCIQRLYINIGGYKVSSRLFSFTKLKMLELSGCVFTSPHISF EEFDLLTHLHLTSVKFQNVDGVSLVIKCSLLQVFTLTACGASSYNVAISIEAPNLQDFQLIGSFGSSLRVNLAPLLTTVYVHPHVRYVDNPNSQPTTTDF IKLLDACPALQRLGTTTDLLRGFGMSNRLPQQVPLRVLVLQEVCLSDPHDVRLLDALLHLLPRLQEVIIIMRAGQNLEDNQRIAETEYEDSKSKANRLRS VTLLQLLGTKFEMGFIRWLLTTSPELENMTIEFSIKSLPTDQILCYKELNGFQRASSTRAQITIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13570			F-box/RNI-like superfamily pro...		Lus10034418 [exp]	0	1
AT4G00020		BRCA2(IV), BRCA...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10017785 [exp]	1.7	0.8514
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10006128 [exp]	5.1	0.8398
AT1G35340			ATP-dependent protease La (LON...		Lus10008251 [exp]	9.6	0.8284
AT1G72640			NAD(P)-binding Rossmann-fold s...		Lus10000373 [exp]	11.0	0.8319
AT5G59980			Polymerase/histidinol phosphat...		Lus10042842 [exp]	11.4	0.7947
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Lus10017011 [exp]	13.5	0.8092
AT1G27510			Protein of unknown function (D...		Lus10042125 [exp]	15.9	0.7948
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10000831 [exp]	16.0	0.7212
					Lus10039070 [exp]	16.2	0.7950
AT2G43980		ATITPK4	"inositol 1,3,4-trisphosphate ...		Lus10006145 [exp]	19.3	0.7770

Compare expression of checked genes

Lus10034418 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.