Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73400 663 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62470 243 / 2e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 242 / 3e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62540 241 / 5e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G77360 205 / 3e-59 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G52640 199 / 5e-57 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15010 197 / 8e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49730 191 / 7e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65820 186 / 2e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 180 / 2e-48 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019141 [exp] 1075 / 0 AT1G73400 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 253 / 1e-75 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003461 [exp] 248 / 5e-74 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030603 [exp] 206 / 2e-59 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030887 [exp] 203 / 2e-58 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001588 [exp] 205 / 3e-58 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001633 [exp] 202 / 1e-57 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011566 [exp] 181 / 2e-49 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10041193 [exp] 178 / 7e-49 AT3G22670 531 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G098600 [exp] 745 / 0 AT1G73400 670 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G121400 [exp] 249 / 1e-74 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G102700 [exp] 216 / 3e-63 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G181900 [exp] 209 / 7e-61 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G176100 [exp] 196 / 5e-55 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G114700 [exp] 190 / 2e-53 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G070200 [exp] 184 / 2e-51 AT1G74900 590 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G045000 [exp] 174 / 3e-47 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.007G079400 [exp] 173 / 4e-47 AT1G02420 649 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 174 / 9e-47 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10034419 pacid=23176062 polypeptide=Lus10034419 locus=Lus10034419.g ID=Lus10034419.BGIv1.0 annot-version=v1.0 ATGAGAAAATTCCGGCAGTCTCTTCTCATCCTCAAAGCATTCCGTCGTGCCGATACCATCTCCTCCGTCAGTAAAGCTTCTTCAGTTTCGCGCAGTTCAC CGAACATTGGTTTCCTTTCTCAACGTCCTCGTCCAAAATTTCCCAGCTTCATCTTCACTACTTCACGCTCGTATTGCACTGAGTCAGTTATATCTGAACA ACAAACGCTTACCGCCAGTCAGAGACGCAATCTAAGAGAACTCGACACTGATAGAGTTTGTGAAACTATAGCTGGAGCTTCTTCCGATTCATTGCATCCC AAGCAGAATCTTCATATGGAGGAAGCACTCGATCAGCTTGGTTTACAACTCACTACTGATTTGGTCCTCGATGTTCTATACAGGCTTCGTTCTGACGAAA AGACGGCTTTCAGATTCTTTACATGGGCAGGAAGGCAGCAAGATTATGTTCACGAGTCTTCTGCTTATAACGAGATCATGGACATTTTGTCAAGTACCAG GTACAAAGTGAAGCAGTTCAGGATCGTGTGCGATATGCTTGATTACATGAAGAGGGCCAATAGGACCAGCGTCCCTGTTGAGGTTTTGTTGAAGATTTTG AAAGAATACACTCTGAAGTACCTAACTCATGTTCAGAAATTTGCTAAGAAGAAGAGGATTAGGGTGAAGACTCAACCAGAAATCAATGCTTTTAACTTGC TTTTGGATGCTTTGTGCAAGAGTTGTTTGGTTGAGGATGCTGAAGCTTTGTTAAACAGGATGAAGAGCAAGGTTAAGCCTGATGGAAATACATACAACAT ACTGTTTTTTGGGTGGTGTAGGGTTAGGAATCCGACTCGAGCTATGAAAGTTCTTGATGAAATGGTTGAACTTGGCCTCGCACCTGATAGTTTTACTTAC ATCACCGCTATAGATACGTTTTGCAGAGCTGGTATGGTGGATGAGGCAGCTGAATTATTCGAATTCATGAGAACGAAAGGTTCAACTTTGTCTTCCCCTA CTGCAAAAACTTACGGGATAATGATTGTAGCTCTGGTTCAGAATGATAGAATGGATGAGTGCTTGAAACTCATAGGGCATATGACTGCAAGTGGCTGTCT CCCGGATGTTCCAACGTACAATGAAATGATTGAAGGAATGTATATGGCTGGCAAGGTAGATGAAGCCTACAGGTTTTTGCAAGAGATGGGCGACAAAGGT TATCCTCCTGACATTGTTACTTATAATTGTTTGCTAAACGTACTCTGCAAGAATAAAGAAGCCGATGAAGCACTCAAGCTTTATGGGAAAATGATGGAGG CGGGATGTTTGCCTAGTGTGCAGACATATAATATGCTCATTTCAATGTATTTTAAGATGGATGATTATGATGGTGCATGTGAGACTTGGGACGAAATGGA AAAAAGAGGCTGTGAACGGGATGTTGATACTTATTCTGTGATGATAGATGGGCTGTTTGATTGCAATAAGATTGAGGAAGCATGTTTTCTTATAGAAGAA CTTGTTGATAAGGGCATGAAATTGCCTTACAAGCAGTTTGACTCTTTCCTGATGCAGCTTTCTGTTACTGGTAATCTAAAAGCGATCCACAAACTCTCGG AGGCAATGAGGAAGTTCTATAATCCTTCTATGGCTAGGCGCTTCGCACTTAATCAGAAGCGTAAAAGCCTGAGTTTTAAAGGAAGGAAGAGCATTTGA
AA sequence Show only first row Show all	>Lus10034419 pacid=23176062 polypeptide=Lus10034419 locus=Lus10034419.g ID=Lus10034419.BGIv1.0 annot-version=v1.0 MRKFRQSLLILKAFRRADTISSVSKASSVSRSSPNIGFLSQRPRPKFPSFIFTTSRSYCTESVISEQQTLTASQRRNLRELDTDRVCETIAGASSDSLHP KQNLHMEEALDQLGLQLTTDLVLDVLYRLRSDEKTAFRFFTWAGRQQDYVHESSAYNEIMDILSSTRYKVKQFRIVCDMLDYMKRANRTSVPVEVLLKIL KEYTLKYLTHVQKFAKKKRIRVKTQPEINAFNLLLDALCKSCLVEDAEALLNRMKSKVKPDGNTYNILFFGWCRVRNPTRAMKVLDEMVELGLAPDSFTY ITAIDTFCRAGMVDEAAELFEFMRTKGSTLSSPTAKTYGIMIVALVQNDRMDECLKLIGHMTASGCLPDVPTYNEMIEGMYMAGKVDEAYRFLQEMGDKG YPPDIVTYNCLLNVLCKNKEADEALKLYGKMMEAGCLPSVQTYNMLISMYFKMDDYDGACETWDEMEKRGCERDVDTYSVMIDGLFDCNKIEEACFLIEE LVDKGMKLPYKQFDSFLMQLSVTGNLKAIHKLSEAMRKFYNPSMARRFALNQKRKSLSFKGRKSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73400			Pentatricopeptide repeat (PPR)...		Lus10034419 [exp]	0	1
AT5G39680		EMB2744	EMBRYO DEFECTIVE 2744, Pentatr...		Lus10001483 [exp]	23.5	0.5559
AT1G48310		CHR18, CHA18	chromatin remodeling factor18 ...		Lus10006642 [exp]	28.6	0.5126
AT1G71150			unknown protein		Lus10034613 [exp]	38.6	0.5192
AT1G28270		RALFL4	ralf-like 4 (.1)		Lus10015431 [exp]	51.3	0.5052
AT4G19890			Pentatricopeptide repeat (PPR-...		Lus10006083 [exp]	62.5	0.4667
					Lus10006537 [exp]	80.3	0.5032
AT1G08315			ARM repeat superfamily protein...		Lus10006007 [exp]	82.5	0.5016
AT2G17030			F-box family protein with a do...		Lus10022618 [exp]	118.5	0.4470
					Lus10019456 [exp]	121.1	0.4693
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10000746 [exp]	191.9	0.4424

Compare expression of checked genes

Lus10034419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.