Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28760 382 / 9e-129 Uncharacterized conserved protein (DUF2215) (.1) AT5G67610 215 / 6e-64 Uncharacterized conserved protein (DUF2215) (.1), Uncharacterized conserved protein (DUF2215) (.2) AT3G49840 207 / 4e-61 Uncharacterized conserved protein (DUF2215) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019140 [exp] 660 / 0 AT5G67610 320 / 6e-105 Uncharacterized conserved protein (DUF2215) (.1), Uncharacterized conserved protein (DUF2215) (.2) Lus10019263 [exp] 241 / 9e-74 AT5G67610 441 / 2e-151 Uncharacterized conserved protein (DUF2215) (.1), Uncharacterized conserved protein (DUF2215) (.2) Lus10011548 [exp] 246 / 1e-71 AT4G37670 763 / 0.0 N-acetyl-l-glutamate synthase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G064800 [exp] 519 / 0 AT1G28760 416 / 2e-141 Uncharacterized conserved protein (DUF2215) (.1) Potri.019G039300 [exp] 400 / 2e-137 AT1G28760 320 / 1e-106 Uncharacterized conserved protein (DUF2215) (.1) Potri.007G005500 [exp] 247 / 5e-76 AT5G67610 400 / 1e-135 Uncharacterized conserved protein (DUF2215) (.1), Uncharacterized conserved protein (DUF2215) (.2) Potri.019G039401 [exp] 87 / 1e-20 AT1G28760 44 / 2e-06 Uncharacterized conserved protein (DUF2215) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10225 [flax] [poplar] NEMP NEMP family
Representative CDS sequence Show only first row Show all	>Lus10034420 pacid=23176087 polypeptide=Lus10034420 locus=Lus10034420.g ID=Lus10034420.BGIv1.0 annot-version=v1.0 ATGGTATCCTCTTCGCTTCCTCTGCTTCTTCTCTTGTCTGTGACGCTTTCATCTTCCATCATTCCCCTATCTCATGCATCCCCCGAAGCGACCATTCTGA AAGGTGTAGATCTGGGAAACCCTCTCCTTGCTGTTAATTTGAAGCCTGGGTATGTACACTCATCTGACAGTGATACCAAGGAAGCATTGTTCTGCGATCG AGTCAAAGTTTCTGGTCTATCGAGATTGAAACTTGCTAGTTACTCTAACTCGCTCAGAGTTACGCTGGTACCCTCGGCTGTAATCCCTGAAAGATTGCAT CGGAGAATTCAAGTTTGCTTCCACCGGAATGTTTCAACGGGATGGTGTGATTGTGGTAAAGACGAGTGGAAAACGTTTCAAAATGGTCAATGGAGCGTGT TCATGTCTCCTTATGGGGAGAGATATGTTGATGTGAAGGCCACTGGAGAAATTTCTGGGCATATTACTGTCCACATTGAAGAAGAATCACAACGTTGGCG CCTCTTGTGTCTGGCAGTGGGACTCATCTTACTATTTCTTGCTCCAATAGTTAGCAGCTGGGTTCCTTTCTATTATAGCTCTTCCATGGCTATTGGTATT ATTCTTGTCATCGTCATTCTTCTATTTCAGGGTATGAAGTTACTTCCAGCCGGGAGGAAAAACATTTTCTATCTCTCGATATATGGATCAGTGCTTGGGG CAGGGACCATTATTTTGCATCACGTATCAGAGCTCATCAATTCTATTCTTCTTAACTTTGGGCTGGATGAAGAGATGCACAATCCGATATACATATTTGT ATCAGTTGGCATTGTACTTGCTGGAGCAGCCTTAGGGTATTGGATGGTGAGGAAGTTTGTTGTCTCAAAAGATGGAAATGTGGACAGTGGTGTAGCACAG TTTGTTAAATGGGCAATTCGTGCTGTCGCAATAACATTCATCTTCCAGAGCACAGCTGACTCGCTGTATGCATTGGTCACAGTGGTTCTATCATACACGA TATGCTTTTTAATCATGAAGTGGATGAGGCGGCCCAAATACCAGTCGGGGAAAGTGGCAGGAAAGCAGAGTCCTGAATTCTACCGCAGACCAGCAGCAGC AGGCAAAATCGGCCAGGGAGGGAGACCGTCGAGTGCTTGGGTGAACTCCCCTGTGAAAGGATTGGTGACGTCTCCATCTGCCTGTACTAGCCCTCTAGCG CAGCAAGATTACTACTCAACCTTCCATAAAACAGCGAAAAGAAAGAAGTTTACAAAGGAAGAATGGGACGAGTTCACGAGGGAGTCCACGGAAGAAGCAA TGAGAGAATGGGCATCATCTCCGGAAGTGGCGAGCTGGCTGATCAACAACGCAAACCGAATTCAACTAGTACCAAGCGATGGCATTTCAGAAGAGATATC AGGAAGTGACTCAGACTCGGCCGGGGAAGACGAATCGAGTCACAAACGCGGGCTTAGCTGCTTATTCAGCTGGTGA
AA sequence Show only first row Show all	>Lus10034420 pacid=23176087 polypeptide=Lus10034420 locus=Lus10034420.g ID=Lus10034420.BGIv1.0 annot-version=v1.0 MVSSSLPLLLLLSVTLSSSIIPLSHASPEATILKGVDLGNPLLAVNLKPGYVHSSDSDTKEALFCDRVKVSGLSRLKLASYSNSLRVTLVPSAVIPERLH RRIQVCFHRNVSTGWCDCGKDEWKTFQNGQWSVFMSPYGERYVDVKATGEISGHITVHIEEESQRWRLLCLAVGLILLFLAPIVSSWVPFYYSSSMAIGI ILVIVILLFQGMKLLPAGRKNIFYLSIYGSVLGAGTIILHHVSELINSILLNFGLDEEMHNPIYIFVSVGIVLAGAALGYWMVRKFVVSKDGNVDSGVAQ FVKWAIRAVAITFIFQSTADSLYALVTVVLSYTICFLIMKWMRRPKYQSGKVAGKQSPEFYRRPAAAGKIGQGGRPSSAWVNSPVKGLVTSPSACTSPLA QQDYYSTFHKTAKRKKFTKEEWDEFTRESTEEAMREWASSPEVASWLINNANRIQLVPSDGISEEISGSDSDSAGEDESSHKRGLSCLFSW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28760			Uncharacterized conserved prot...		Lus10034420 [exp]	0	1
AT3G51250			Senescence/dehydration-associa...		Lus10041892 [exp]	1.7	0.8018
AT1G20830		MCD1	multiple chloroplast division ...		Lus10030727 [exp]	2.0	0.8231
AT4G39680			SAP domain-containing protein ...		Lus10016433 [exp]	2.8	0.8217
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10037917 [exp]	8.5	0.7941
AT1G02880		TPK1	thiamin pyrophosphokinase1 (.1...		Lus10010283 [exp]	9.2	0.7875
AT2G32000			DNA topoisomerase, type IA, co...		Lus10021692 [exp]	13.0	0.7846
AT3G18580			Nucleic acid-binding, OB-fold-...		Lus10038946 [exp]	16.3	0.6957
AT5G43822			Pentatricopeptide repeat (PPR)...		Lus10030735 [exp]	23.1	0.7461
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Lus10019587 [exp]	25.0	0.7515
AT1G75340	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10040567 [exp]	27.2	0.7145

Compare expression of checked genes

Lus10034420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.