Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02150 707 / 0 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 295 / 2e-89 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G01740 267 / 1e-80 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 257 / 2e-75 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G55840 262 / 6e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09680 249 / 2e-73 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61400 249 / 3e-73 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 249 / 2e-72 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 235 / 5e-68 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 236 / 1e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027916 [exp] 287 / 2e-86 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 286 / 9e-86 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 285 / 1e-83 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 254 / 8e-74 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 250 / 1e-71 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013841 [exp] 245 / 1e-69 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 230 / 4e-66 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10012037 [exp] 229 / 8e-66 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037968 [exp] 235 / 1e-65 AT5G55840 1131 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G098400 [exp] 825 / 0 AT2G02150 924 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 280 / 9e-82 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 271 / 3e-80 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G035700 [exp] 259 / 3e-76 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.017G131400 [exp] 255 / 7e-76 AT1G09680 669 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G368700 [exp] 261 / 8e-75 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G148700 [exp] 249 / 6e-73 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 249 / 1e-72 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G147700 [exp] 247 / 3e-72 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G069600 [exp] 247 / 8e-72 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10034421 pacid=23176007 polypeptide=Lus10034421 locus=Lus10034421.g ID=Lus10034421.BGIv1.0 annot-version=v1.0 ATGTTAATTCCACTGCGATACAATCTACTTCACTCTCGCCTTCGCAATCGCATACTCCCTCTCTCTTTCAACAACGGTATCTGGTTCACCAACATTCTCT GCATGCTCAGGTTCCCGTTTGCCGCCGCCGCCACAATCTCTTCACACTCTTTCGGCGCGGTTGAAGAGCTGGGCAGAGAATCGAAGACTAAAGTCGTTCA ACAAGGGCAGTGGGATGATCCCAGAATTTCTGGCCTCGTCGGTTCATCTCTAGCTCCTATACGGGCGTCCAAGGTTGTATTGGATTTAAGACATGACCCG CGGTTAGCATTGAAATTCTTCAATTGGGCGAAAACCACCCTGGTTGGGTTTCGCCACACCACTGAATCGTATTGCTTATTGGTGCACATTTTGTTTTACG GTAAAATGTATTCAGATGCTACCAGCTTGCTCAAGGAATTGATCTTGTCCGGCAGGAGTTTGCCAGGTTTTGACGCGTTTGAAGTTTTGTGGTCGACGAG GAATGTTTGCGTCCCGGGTTACGGCGTGTTTGATGCGCTTTTCAGTGTTTATGTAGAGCTAGGGATGCTTGATGAAGCTGCTGGGTGTTTTGCAAGGACG AGAAGTCATAGGGTATTGCCTAAAGCAAGATCATGTAATGCCCTACTGCATAAGCTCTCAAGGGCAAGGAAAGATGGTGGTATAAGGAACTTTTTTAAGA ATATGGTTAGTGCTGGAATTTCTCCGTCTATCTTTACTTACAACATCATGATTGATCATATGTGCAAAGAAGGGGATATAGAAGCTGCTAAAGTTCTGTT GGAGGAAATGAAATACAAGGGTGTGATGCCCGATGTTGTAACTTACAATTCTGTTATTGATGGATGTGGCAAATTCGGGCTTCTGGACGATTCAATTGCC CTCTTCGAGGAAATGAAGCAGTCGGTATGTGAACCTGATGTGGTAACTTACAATGCCTTGATTAATTGTTTTTGTAAATTTGATAGAATGCCTAGAGCTT TTCAGTTTTTCTCCGAGATGAAGCATGCCGGAGTTAGACCTAGTGTGGTAACTTATAGCACAGTAATTGATGCATTGTGCAAGGAAGGAATGATGCAGCA GGGAATCAAGTTTTTTATAGACATGAAACGCCTTGGTTATTCTCCCAATGAGCACACTATGCTGAAAGCTAGAGTAAGTCCTAATCTTGAAACGTATACT GCCCTTGCTCATGGATATGTTAAGGGCAAGAGCAAAGAAGATTACATAGGGTTTTTGAAGAAAATGAAGGTGGAAGGATTTCAACCTGATTGGATGCTCT ATGGGACCATCACTTGGGGTCTCTGCACCGAAAAGAAGTTTGAAGAATGCAAACTACTTATTCGTGATATGAGAGAGCAAGGTATAGATGCAAACCCTGT AATATACACAACACTTATGGATGCTTATTTCAAAGCTGGAATGACTGTTGATGCACTCAGACTGTTACAGGAAATGTGGGACCTGGGTGTTGAGGCTACG GTTGTAACTTTTTGTGTATTAATTGATGGTTTGTGCAAAAAGAGTATGGTTCAGGAAGCAATTGATTATTTTAGTAGGATGCCTGAGTATGGTTTGCAAC CTAATGTTGCAGTTTACACAGCCTTGGTTGATGGTCTTTGTAAAAACAATTGCATTGAAGCAGCTGTGAAGTTATTCATTGAAATGCAGGAGAAACATAT TATTCCAGATAAGACTGCGTACACTGCTCTATTAGATGGGTATTTCAAGCATGGTAACTTGGAAGAAGCTTTAAATACAAGAAACAGGATGGTTGAGCTA GGTCAGCAGCTTGATCTTCATGCATACACTTCGTTGGTTTCAGGTTGTCTCAAATGCGGCCGTTTGCAGCAAGCTAGGATATTTCTTGCTGAAATGATTG ACAATGGTATCCTGCCAGATCGGATTCTTTGTATTAGCCTACTCAAGAAGTATTATGAGGAAGGGACTATTGCTGAAGCAATTGAATTGCAAAATGACCT TGCAAAGTTGGGTCTGATAGACGGGGATATGCAAATAAGTATTAACGAAGACATTCTGCCACATAGGAAAATCTGA
AA sequence Show only first row Show all	>Lus10034421 pacid=23176007 polypeptide=Lus10034421 locus=Lus10034421.g ID=Lus10034421.BGIv1.0 annot-version=v1.0 MLIPLRYNLLHSRLRNRILPLSFNNGIWFTNILCMLRFPFAAAATISSHSFGAVEELGRESKTKVVQQGQWDDPRISGLVGSSLAPIRASKVVLDLRHDP RLALKFFNWAKTTLVGFRHTTESYCLLVHILFYGKMYSDATSLLKELILSGRSLPGFDAFEVLWSTRNVCVPGYGVFDALFSVYVELGMLDEAAGCFART RSHRVLPKARSCNALLHKLSRARKDGGIRNFFKNMVSAGISPSIFTYNIMIDHMCKEGDIEAAKVLLEEMKYKGVMPDVVTYNSVIDGCGKFGLLDDSIA LFEEMKQSVCEPDVVTYNALINCFCKFDRMPRAFQFFSEMKHAGVRPSVVTYSTVIDALCKEGMMQQGIKFFIDMKRLGYSPNEHTMLKARVSPNLETYT ALAHGYVKGKSKEDYIGFLKKMKVEGFQPDWMLYGTITWGLCTEKKFEECKLLIRDMREQGIDANPVIYTTLMDAYFKAGMTVDALRLLQEMWDLGVEAT VVTFCVLIDGLCKKSMVQEAIDYFSRMPEYGLQPNVAVYTALVDGLCKNNCIEAAVKLFIEMQEKHIIPDKTAYTALLDGYFKHGNLEEALNTRNRMVEL GQQLDLHAYTSLVSGCLKCGRLQQARIFLAEMIDNGILPDRILCISLLKKYYEEGTIAEAIELQNDLAKLGLIDGDMQISINEDILPHRKI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02150		EMB2794	EMBRYO DEFECTIVE 2794, Tetratr...		Lus10034421 [exp]	0	1
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10037799 [exp]	1.7	0.8776
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10017082 [exp]	5.3	0.8834
AT1G71060			Tetratricopeptide repeat (TPR)...		Lus10001633 [exp]	6.0	0.8646
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10032922 [exp]	6.6	0.8742
AT5G65920			ARM repeat superfamily protein...		Lus10005500 [exp]	7.6	0.8444
AT4G04940			transducin family protein / WD...		Lus10035842 [exp]	9.1	0.8845
AT1G56690			Pentatricopeptide repeat (PPR)...		Lus10013149 [exp]	10.6	0.8689
AT5G40520			unknown protein		Lus10027029 [exp]	11.4	0.8726
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10012873 [exp]	17.9	0.8594
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Lus10026158 [exp]	18.3	0.8709

Compare expression of checked genes

Lus10034421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.