Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14590 411 / 3e-143 Nucleotide-diphospho-sugar transferase family protein (.1) AT2G02061 388 / 8e-134 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G44820 354 / 3e-121 Nucleotide-diphospho-sugar transferase family protein (.1) AT4G19970 355 / 4e-117 unknown protein AT4G15970 319 / 1e-107 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28710 205 / 4e-63 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) AT1G28700 201 / 1e-61 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28695 197 / 2e-60 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G40900 184 / 2e-55 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G56550 51 / 5e-07 RXGT1 RhamnoGalacturonan specific Xylosyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019139 [exp] 580 / 0 AT1G14590 406 / 8e-142 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031927 [exp] 478 / 3e-171 AT1G14590 386 / 7e-135 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031903 [exp] 331 / 1e-111 AT2G02061 361 / 1e-122 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031330 [exp] 327 / 5e-110 AT2G02061 359 / 4e-122 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041976 [exp] 284 / 3e-93 AT1G14590 292 / 4e-96 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041973 [exp] 283 / 8e-93 AT1G14590 302 / 3e-100 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041977 [exp] 281 / 5e-92 AT1G14590 296 / 9e-98 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10017981 [exp] 276 / 2e-90 AT1G14590 303 / 9e-101 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10032455 [exp] 199 / 2e-60 AT1G28710 259 / 3e-84 Nucleotide-diphospho-sugar transferase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G142200 [exp] 450 / 7e-159 AT1G14590 454 / 2e-160 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.010G099400 [exp] 447 / 5e-157 AT1G14590 490 / 1e-173 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.015G029200 [exp] 369 / 6e-127 AT1G14590 405 / 8e-141 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.012G037300 [exp] 367 / 4e-126 AT1G14590 404 / 1e-140 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.012G112600 [exp] 222 / 7e-70 AT1G28710 306 / 6e-104 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.015G110600 [exp] 217 / 8e-68 AT1G28710 300 / 2e-101 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.014G051600 [exp] 216 / 1e-66 AT1G28710 344 / 5e-117 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.002G139800 [exp] 211 / 2e-65 AT1G28710 337 / 1e-114 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.002G166000 [exp] 59 / 2e-09 AT4G01220 524 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Potri.008G186800 [exp] 51 / 7e-07 AT1G70630 668 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03407 [flax] [poplar] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Lus10034422 pacid=23176000 polypeptide=Lus10034422 locus=Lus10034422.g ID=Lus10034422.BGIv1.0 annot-version=v1.0 ATGCTAGAGGATGTCTACTTTACTTCATGCTACTGGCTTGTACCTACACAGTATGCTGCAATGCATTCATGCAAGTCTTGGATTGCGAACATAATGCCCT GGAAGAAGCAAGGCATACAAGTTGAAGCTGCTGGACTAAATGCAAAAGAGATTACACCTTGTTGCTATACAATGTTGGGGATGAAGCCTAGCAATGAAGA GAAGCTCGACAAAGTACTGAGAGGCGCGGCTATGAGAGATAACAAGACAGTAATTCTAACTACATTGAACGAAGCGTGGGCGGCTCCAGACTCGGTGTTC GATCTCTTCATTGGGAGCTTCCGTACCGGAATAAGGACCCGTAGGCTGTTGAGTCACCTGGTGATCATAGCATTGGATGAGAAAGCATATCGGCGGTGTA AGGAATTGCACAGCCATTGCTATGCTCTTGTGATTGAAGGAGTTGATTTCCGGCACGATGCCTATTTCATGACTCCAGCTTACTTGAAGATGATGTGGAG GAGGATCGACTTCTTACGCACTGTTCTTGAATTGGGTTATAATTTCGTCTTCACGGATGCAGATGTCATGTGGTTTAGAGACCCATTCCCACGGTTTTAT CCAGATGCAGACTTTCAGATTGCTTGTGATCTCTATTCAGGGAGTAGTGTCGACTTAAAGAACAGAGTTAATGGAGGGTTTACTTACGTGAAGGCTAACA ATCGTTCAATTGCGTTTTACAAATTCTGGCACTCTTCACGGTACACTTACCCTGGATATCATGATCAGGATGTTTTTAATTATATCAAGAAGAGTGATTA CGTTAGGGGTCTTGGGTTGAAGATGAGGTTCTTAGACACTGCTTATTTCGGAGGACTTTGTGAACCTAGTAAAGACTTCAATGTCGTTTGCACCATGCAC GCGAATTGCTGTCTGGGCTTGGATAGCAAGCTTATTGATCTCAAGCTCATGCTTGGTGACTGGAGAAACTTTCTGTCCTTGTCACCAAAGCTGAAAAGAG AATTACGCATCTCTTGGAGGGTGCCCCATAACTGCAGCATCGATGCTCTCTTTCGTGATGCTACTCTACGAAACCCTGTTGAAGAAGAACCAGAAGAATA A
AA sequence Show only first row Show all	>Lus10034422 pacid=23176000 polypeptide=Lus10034422 locus=Lus10034422.g ID=Lus10034422.BGIv1.0 annot-version=v1.0 MLEDVYFTSCYWLVPTQYAAMHSCKSWIANIMPWKKQGIQVEAAGLNAKEITPCCYTMLGMKPSNEEKLDKVLRGAAMRDNKTVILTTLNEAWAAPDSVF DLFIGSFRTGIRTRRLLSHLVIIALDEKAYRRCKELHSHCYALVIEGVDFRHDAYFMTPAYLKMMWRRIDFLRTVLELGYNFVFTDADVMWFRDPFPRFY PDADFQIACDLYSGSSVDLKNRVNGGFTYVKANNRSIAFYKFWHSSRYTYPGYHDQDVFNYIKKSDYVRGLGLKMRFLDTAYFGGLCEPSKDFNVVCTMH ANCCLGLDSKLIDLKLMLGDWRNFLSLSPKLKRELRISWRVPHNCSIDALFRDATLRNPVEEEPEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10034422 [exp]	0	1
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10040240 [exp]	7.1	0.7120
AT5G06770	C3HZnF		KH domain-containing protein /...		Lus10021043 [exp]	10.1	0.7754
AT5G14620		DMT7, DRM2	domains rearranged methyltrans...		Lus10032136 [exp]	31.0	0.7240
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10036176 [exp]	31.2	0.7062
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Lus10010979 [exp]	35.2	0.7159
AT5G23130			Peptidoglycan-binding LysM dom...		Lus10013432 [exp]	36.3	0.7086
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Lus10042161 [exp]	47.3	0.6838
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Lus10028309 [exp]	47.6	0.6568
AT4G33480			unknown protein		Lus10020876 [exp]	61.2	0.6958
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Lus10014100 [exp]	63.8	0.6861

Compare expression of checked genes

Lus10034422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.