Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18150 87 / 5e-24 Methyltransferase-related protein (.1) AT5G14602 70 / 2e-17 unknown protein AT5G58375 66 / 1e-15 Methyltransferase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019138 [exp] 141 / 3e-45 AT5G18150 80 / 3e-21 Methyltransferase-related protein (.1) Lus10020287 [exp] 91 / 2e-25 AT5G18150 109 / 4e-33 Methyltransferase-related protein (.1) Lus10005698 [exp] 89 / 8e-25 AT5G18150 108 / 1e-32 Methyltransferase-related protein (.1) Lus10008585 [exp] 62 / 6e-14 AT5G58375 89 / 1e-24 Methyltransferase-related protein (.1) Lus10042227 [exp] 61 / 1e-13 AT5G58375 91 / 2e-25 Methyltransferase-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G058200 [exp] 84 / 6e-23 AT5G18150 114 / 5e-35 Methyltransferase-related protein (.1) Potri.019G035000 [exp] 83 / 2e-22 AT5G18150 109 / 4e-33 Methyltransferase-related protein (.1) Potri.013G155800 [exp] 61 / 2e-13 AT5G58375 67 / 5e-16 Methyltransferase-related protein (.1) Potri.019G127900 [exp] 52 / 6e-10 AT5G58375 64 / 6e-15 Methyltransferase-related protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034423 pacid=23175918 polypeptide=Lus10034423 locus=Lus10034423.g ID=Lus10034423.BGIv1.0 annot-version=v1.0 ATGTGTCCTATGCGGTTGATCTTGGTGTTCCTCTCGGCGGTTTTGGCCGGATATTTTGCCTGGACGACTGCGACGGCTGCTTCTCCCACCGAAGACTCGA CGATTGACAAGCCTGATATCAGGAGGCAGAAGGAGGAATCCAACAAGACGAAGAAGGTCGATTGCTTGTTTCCCTCTTTTTCTCCGCAGGCGATTCGGAA TTGGTTCTGGGTATTTGTGGACATGGCGAGCGGGAGATATTTGTGGAGGAACCTCAATGGAATCAAGATACAACAGAGGAGTTAA
AA sequence Show only first row Show all	>Lus10034423 pacid=23175918 polypeptide=Lus10034423 locus=Lus10034423.g ID=Lus10034423.BGIv1.0 annot-version=v1.0 MCPMRLILVFLSAVLAGYFAWTTATAASPTEDSTIDKPDIRRQKEESNKTKKVDCLFPSFSPQAIRNWFWVFVDMASGRYLWRNLNGIKIQQRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18150			Methyltransferase-related prot...		Lus10034423 [exp]	0	1
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10016847 [exp]	1.4	0.9580
AT2G37980			O-fucosyltransferase family pr...		Lus10017190 [exp]	2.8	0.9454
AT4G34320			Protein of unknown function (D...		Lus10040489 [exp]	6.5	0.9283
AT5G38700			unknown protein		Lus10002433 [exp]	7.1	0.9402
AT2G41010		ATCAMBP25	calmodulin (CAM)-binding prote...		Lus10029339 [exp]	7.3	0.9303
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Lus10010938 [exp]	7.7	0.9095
AT1G06450			Polynucleotidyl transferase, r...		Lus10000327 [exp]	7.7	0.9340
AT1G07160			Protein phosphatase 2C family ...		Lus10026381 [exp]	8.0	0.9272
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10007349 [exp]	8.1	0.9037
AT3G54100			O-fucosyltransferase family pr...		Lus10021119 [exp]	8.2	0.9383

Compare expression of checked genes

Lus10034423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.