Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17330 612 / 0 GAD1, GAD GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) AT2G02010 604 / 0 GAD4 glutamate decarboxylase 4 (.1) AT3G17760 580 / 0 GAD5 glutamate decarboxylase 5 (.1.2) AT2G02000 577 / 0 GAD3 glutamate decarboxylase 3 (.1) AT1G65960 574 / 0 GAD2 glutamate decarboxylase 2 (.1.2) AT3G17720 255 / 3e-85 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G27980 64 / 4e-11 DPL1, ATDPL1 dihydrosphingosine phosphate lyase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019136 [exp] 656 / 0 AT2G02010 883 / 0.0 glutamate decarboxylase 4 (.1) Lus10035096 [exp] 624 / 0 AT2G02010 835 / 0.0 glutamate decarboxylase 4 (.1) Lus10028530 [exp] 589 / 0 AT5G17330 855 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Lus10031934 [exp] 237 / 3e-79 AT2G02010 229 / 2e-74 glutamate decarboxylase 4 (.1) Lus10009116 [exp] 166 / 2e-46 AT2G02000 248 / 3e-75 glutamate decarboxylase 3 (.1) Lus10003129 [exp] 59 / 2e-09 AT1G27980 781 / 0.0 dihydrosphingosine phosphate lyase (.1) Lus10011345 [exp] 57 / 6e-09 AT1G27980 794 / 0.0 dihydrosphingosine phosphate lyase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G141100 [exp] 625 / 0 AT2G02010 853 / 0.0 glutamate decarboxylase 4 (.1) Potri.004G075200 [exp] 618 / 0 AT5G17330 904 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.010G100500 [exp] 617 / 0 AT2G02010 879 / 0.0 glutamate decarboxylase 4 (.1) Potri.017G144421 [exp] 607 / 0 AT5G17330 880 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.004G075300 [exp] 605 / 0 AT5G17330 870 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.012G039000 [exp] 585 / 0 AT3G17760 816 / 0.0 glutamate decarboxylase 5 (.1.2) Potri.003G168800 [exp] 72 / 1e-13 AT1G27980 796 / 0.0 dihydrosphingosine phosphate lyase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00282 [flax] [poplar] Pyridoxal_deC Pyridoxal-dependent decarboxylase conserved domain
Representative CDS sequence Show only first row Show all	>Lus10034425 pacid=23176105 polypeptide=Lus10034425 locus=Lus10034425.g ID=Lus10034425.BGIv1.0 annot-version=v1.0 ATGGCTTCCGAATCGGACATTTCAGTCCACTCCACGTTCGCTTCCCGCTACGTCCGGGAGTCACTCCCCAGGTACAAGATGCCCGACAACTCCATCCCAA AAGAAGCAGCTTTCCAGATCATCAACGACGAGCTCATGCTCGACGGGAAGCCGAGGTTGAACCTCGCTTCCTTCGTCACCACCTGGATGGAGCCCGAGTG CGACAAGCTCATCATGGACGCCCTCAACAAGAACTACGTCGACATGGATGAGTACCCTGTCACTACCGAGCTCCAGAACCGTTGCGTCAACATGATCGCT CACCTATTCAATGCTCCCCTCGGCGACTCCGATGCTGCTGTCGGCGTAGGCACCGTTGGGTCCTCCGAGGCCATCATGCTCGCTGGCCTTGCCTTCAAAC GCCAGTGGCAGAACAAACGTAGAGCCCAAGGTTTGCCCGTTGACAAGCCTAACATCGTCACCGGCGCTAATGTTCAGGTATGCTGGGAGAAATTTGCGAG GTACTTCGAGGTGGAGCTGAAGGAAGTGAAGTTAACGGAAGGATACTACGTGATGGACCCGGAAAAGGCAGTAGAAATGGTTGACGAAAACACAATCTGC GTAGCCGCAATTCTAGGGTCCACACTCAACGGCGAGTTCGAAGACGTCAAGCGCCTCAACGACTTGTTGATCGAGAAGAACAAACTCACCGGATGGGACA CCCCAATCCACGTGGATGCTGCCAGCGGAGGCTTCATCGCCCCTTTCCTATGGCCGGAGCTGGAATGGGACTTCCGTCTCCCGCTCGTCAAGAGCATCAA CGTCAGCGGCCACAAGTACGGCCTCGTCTACGCCGGCGTAGGCTGGGTTATCTGGAGGAGCAAGGAGGATCTCCCGGAGGAATTGATCTTCCACATCAAC TACCTCGGAGCCGATCAGCCGACATTCACTCTCAACCTCTCTAAAGCCAGATCATCGCGCAGTACTACCAATTGA
AA sequence Show only first row Show all	>Lus10034425 pacid=23176105 polypeptide=Lus10034425 locus=Lus10034425.g ID=Lus10034425.BGIv1.0 annot-version=v1.0 MASESDISVHSTFASRYVRESLPRYKMPDNSIPKEAAFQIINDELMLDGKPRLNLASFVTTWMEPECDKLIMDALNKNYVDMDEYPVTTELQNRCVNMIA HLFNAPLGDSDAAVGVGTVGSSEAIMLAGLAFKRQWQNKRRAQGLPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLTEGYYVMDPEKAVEMVDENTIC VAAILGSTLNGEFEDVKRLNDLLIEKNKLTGWDTPIHVDAASGGFIAPFLWPELEWDFRLPLVKSINVSGHKYGLVYAGVGWVIWRSKEDLPEELIFHIN YLGADQPTFTLNLSKARSSRSTTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17330		GAD1, GAD	GLUTAMATE DECARBOXYLASE 1, glu...		Lus10034425 [exp]	0	1
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10034426 [exp]	1.0	0.9984
AT1G70420			Protein of unknown function (D...		Lus10030612 [exp]	1.7	0.9901
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Lus10023824 [exp]	2.4	0.9908
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007511 [exp]	3.9	0.9873
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Lus10020644 [exp]	5.7	0.9877
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Lus10029896 [exp]	7.5	0.9842
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Lus10016962 [exp]	8.8	0.9865
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10017981 [exp]	9.2	0.9856
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10037205 [exp]	9.2	0.9813
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10027598 [exp]	9.4	0.9831

Compare expression of checked genes

Lus10034425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.