Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14730 259 / 3e-88 Cytochrome b561/ferric reductase transmembrane protein family (.1) AT5G38630 145 / 5e-43 ACYB-1 cytochrome B561-1 (.1) AT4G25570 142 / 9e-42 ACYB-2 Cytochrome b561/ferric reductase transmembrane protein family (.1) AT1G26100 83 / 3e-19 Cytochrome b561/ferric reductase transmembrane protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031935 [exp] 336 / 2e-118 AT1G14730 284 / 8e-98 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10019135 [exp] 233 / 4e-78 AT1G14730 177 / 2e-56 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10035096 [exp] 238 / 9e-75 AT2G02010 835 / 0.0 glutamate decarboxylase 4 (.1) Lus10039216 [exp] 154 / 8e-47 AT4G25570 305 / 6e-106 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10028996 [exp] 145 / 4e-43 AT4G25570 145 / 4e-43 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10014986 [exp] 136 / 5e-39 AT4G25570 331 / 8e-115 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10038866 [exp] 134 / 1e-38 AT4G25570 326 / 3e-114 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10027461 [exp] 132 / 1e-37 AT4G25570 287 / 3e-98 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10003682 [exp] 123 / 1e-34 AT4G25570 131 / 1e-37 Cytochrome b561/ferric reductase transmembrane protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G102400 [exp] 295 / 4e-102 AT1G14730 271 / 7e-93 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.008G138300 [exp] 289 / 5e-100 AT1G14730 252 / 2e-85 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.015G143700 [exp] 157 / 8e-48 AT4G25570 297 / 8e-103 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.012G141000 [exp] 150 / 4e-45 AT4G25570 254 / 5e-86 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.004G103800 [exp] 139 / 8e-41 AT5G38630 301 / 2e-104 cytochrome B561-1 (.1) Potri.017G111700 [exp] 136 / 1e-39 AT5G38630 321 / 2e-112 cytochrome B561-1 (.1) Potri.008G115300 [exp] 130 / 2e-37 AT5G38630 272 / 7e-93 cytochrome B561-1 (.1) Potri.008G115200 [exp] 86 / 3e-20 AT1G26100 270 / 6e-92 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.010G131100 [exp] 84 / 1e-19 AT1G26100 270 / 6e-92 Cytochrome b561/ferric reductase transmembrane protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [flax] [poplar] 2heme_cytochrom PF03188 [flax] [poplar] Cytochrom_B561 Eukaryotic cytochrome b561
Representative CDS sequence Show only first row Show all	>Lus10034427 pacid=23176051 polypeptide=Lus10034427 locus=Lus10034427.g ID=Lus10034427.BGIv1.0 annot-version=v1.0 ATGGAGACAGGGGTGGTATACAGGAGGTCTGCATCTGGGCTGACGGTAGGTGCTCACGTGTTTGGGATACTAGGGATCATACTGATGCTGGTGTGGTTGC TTCACTTCCGTGAAGGCATTGAGTATGATTCTGACAACCCAGCTCGCGTCTTCAATGTTCATCCATTCCTCATGTTCTGCGGATTCATCTTCCTCGATGG TCAAGCTATGATGGCATACAAGTCTGTGCCGGCGGCGAGAGAAGCACAGAAGGCAGTGCACATGGTCCTGAACCTAGTCGGAATAGCACTAGGGATCGCC GGAATAAGCGCGGCGTTCAGGTTCCATGACATGGTGAACTCGGAGGACATGTACAGCCTTCATTCCTGGATAGGCCTCACCACATTCTGCCTGGTCGGGC TCCAGTGGCTCCTCGGATGTTTCACCTACATGTTCCCCAAGGCCAGTCAGGGGACGCGTGGCAGCATGCTGGCATGGCACATCAGCGGCGGCAGGGCCCT GCTGTACATGGCAATCTGCGCCGCCCTCACCGGACTCATGGAGAAGTCCAGCATCCTACGGCTCCAAGGATACGGCGAGGCCAGGCTCGTCAACTTCATT GGACTCTGCATCTTACTCTTCGGCATCTTCGTTGACCTTTCTGTTGCTCTGGCTCATCATGCCTAG
AA sequence Show only first row Show all	>Lus10034427 pacid=23176051 polypeptide=Lus10034427 locus=Lus10034427.g ID=Lus10034427.BGIv1.0 annot-version=v1.0 METGVVYRRSASGLTVGAHVFGILGIILMLVWLLHFREGIEYDSDNPARVFNVHPFLMFCGFIFLDGQAMMAYKSVPAAREAQKAVHMVLNLVGIALGIA GISAAFRFHDMVNSEDMYSLHSWIGLTTFCLVGLQWLLGCFTYMFPKASQGTRGSMLAWHISGGRALLYMAICAALTGLMEKSSILRLQGYGEARLVNFI GLCILLFGIFVDLSVALAHHA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14730			Cytochrome b561/ferric reducta...		Lus10034427 [exp]	0	1
AT1G14730			Cytochrome b561/ferric reducta...		Lus10031935 [exp]	2.2	0.9576
AT5G22870			Late embryogenesis abundant (L...		Lus10016161 [exp]	4.0	0.9461
AT1G79480			Carbohydrate-binding X8 domain...		Lus10001764 [exp]	4.9	0.9268
AT5G22870			Late embryogenesis abundant (L...		Lus10021404 [exp]	5.2	0.9348
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10022436 [exp]	7.8	0.8498
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10022141 [exp]	8.5	0.9096
AT5G03795			Exostosin family protein (.1)		Lus10025178 [exp]	11.8	0.8727
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Lus10011158 [exp]	12.8	0.9251
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Lus10028874 [exp]	14.3	0.9197
AT3G26350			unknown protein		Lus10006464 [exp]	14.5	0.9084

Compare expression of checked genes

Lus10034427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.