Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68080 380 / 5e-130 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019134 [exp] 187 / 3e-57 AT1G68080 129 / 5e-36 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G139000 [exp] 450 / 2e-157 AT1G68080 450 / 5e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034428 pacid=23175969 polypeptide=Lus10034428 locus=Lus10034428.g ID=Lus10034428.BGIv1.0 annot-version=v1.0 ATGGGAGACGACAGTGGCAGTAGCAGCAAAGTTCAGAGTGAGGCGCGCCTAATCATCCCCGATTTCATCTCCCTTCAAGAGTGCCAGGAACTGGAGTTCA TTCACCGGAGCTGCTCCACCGTTGGATATCGTCCCAACGTCTTCTCAACAACTCTATCCCACCTTATCGCCACCAATTCTTCCCACCTCATCATCCCTTT CCTCTCCATCCGTGACCGCCTGAAAGACAAGGTTGAGGAGTTCTTCCACTGTGAGTACGAGCTCTGCGTCGAGTTCACTGGTTTGATTAGTTGGACTCGA GGCGCCAGCATCGGCTGGCACACTGATGACAACAGGCCTTACCTCAAACAGCGTCACTTCACCGTACCTATCCATCTTCTTCTTCTTTTAACGTTCAACT GGGATTCCTTCTTCTTGCTAACTGCTTCCCGTGATTTTTTTTATGCTTATGTTGTTGAAAAGGCAGTTTGCTACTTGAATACTTACGGCGAGGATTTCAA AGGTGGGCTTTTCCACTTCCAGAATGGACACCCTAAAACTATTACTCCAATGGCAGGGGCTGTTTCCATCTATACAGCTGATGACCGTAATGTTCATTCG GTTGATGAGATATTTGAAGGAGAAAGATTGACACTTGCGATGTGGTTCAGCCGTGACAGTGCATATGATGAAGATGCTAAACTTATATCCCTTCTGTCAT CAACCGAGGCATGTACTACCAGAAGTGTTTCTGAACAATTGCCTGTACCAATGCCAGCGTCTAGCAATATGTATTGGTTCTGTCTTGATACAGAGCAGAA TCAAGAATCGGGATTTGACATATGTTGTGCAAGGATTTGTGCTGCAGGATTTGATATCTACTATTCTTCTGAAGAAAAGCTACCCTTCTCTGATTTCTCA ACACTGCTCCTACAGCCATTGCAACTAGCAAGGAGGACTGAGTTGTTTGAACAACAATTTGCCAACATTTTGCATGCGTCACAGGTGGTACAATTTTACT GTTGGAAGGCCCCGAAACTAGTGGAGTATCGACAAGTCAGAAAGAGCAAGGTGGGATTTCTGTCTGAGGTACAGCAGGGGGAGATTGCTTCTCTGAGATC CATGTTTGTAAAGGATAATCAACTAGCAGATAAGATGTTCAGTCACTGCCACCAGGAATTCAATTGGGCCAAATTTGCTGATATAGTTGACGAGCTGGAA TGCTACACACTTAGACTGCAGAAAGACTTGGTAATCAGCTTACCACACTGGAGAACCGATCAAATCATGTACAAGGTTCCTGTGAAAGGCCTGGACTCTT TTACTGGTATTTAG
AA sequence Show only first row Show all	>Lus10034428 pacid=23175969 polypeptide=Lus10034428 locus=Lus10034428.g ID=Lus10034428.BGIv1.0 annot-version=v1.0 MGDDSGSSSKVQSEARLIIPDFISLQECQELEFIHRSCSTVGYRPNVFSTTLSHLIATNSSHLIIPFLSIRDRLKDKVEEFFHCEYELCVEFTGLISWTR GASIGWHTDDNRPYLKQRHFTVPIHLLLLLTFNWDSFFLLTASRDFFYAYVVEKAVCYLNTYGEDFKGGLFHFQNGHPKTITPMAGAVSIYTADDRNVHS VDEIFEGERLTLAMWFSRDSAYDEDAKLISLLSSTEACTTRSVSEQLPVPMPASSNMYWFCLDTEQNQESGFDICCARICAAGFDIYYSSEEKLPFSDFS TLLLQPLQLARRTELFEQQFANILHASQVVQFYCWKAPKLVEYRQVRKSKVGFLSEVQQGEIASLRSMFVKDNQLADKMFSHCHQEFNWAKFADIVDELE CYTLRLQKDLVISLPHWRTDQIMYKVPVKGLDSFTGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68080			2-oxoglutarate (2OG) and Fe(II...		Lus10034428 [exp]	0	1
AT1G69450			Early-responsive to dehydratio...		Lus10036791 [exp]	2.8	0.8255
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10007875 [exp]	7.4	0.8280
AT2G27410	B3		Domain of unknown function (DU...		Lus10035394 [exp]	9.6	0.7956
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10007874 [exp]	12.5	0.8051
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10021147 [exp]	14.9	0.7663
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10040775 [exp]	25.8	0.7236
AT1G29750		RKF1	receptor-like kinase in flower...		Lus10015239 [exp]	45.6	0.7271
AT3G02420			unknown protein		Lus10003064 [exp]	46.8	0.7221
AT3G59650			mitochondrial ribosomal protei...		Lus10022178 [exp]	50.5	0.7187
AT3G28700			Protein of unknown function (D...		Lus10007271 [exp]	51.6	0.7629

Compare expression of checked genes

Lus10034428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.