Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01890 395 / 1e-138 PAP8, ATPAP8 purple acid phosphatase 8 (.1.2) AT1G14700 392 / 3e-137 PAP3, ATPAP3 purple acid phosphatase 3 (.1.2) AT1G25230 380 / 1e-132 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G01880 363 / 3e-126 PAP7, ATPAP7 purple acid phosphatase 7 (.1) AT3G17790 349 / 1e-120 ATACP5, ATPAP17, PAP17 purple acid phosphatase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019133 [exp] 513 / 0 AT2G01890 417 / 5e-147 purple acid phosphatase 8 (.1.2) Lus10031941 [exp] 365 / 2e-127 AT1G14700 426 / 2e-150 purple acid phosphatase 3 (.1.2) Lus10035100 [exp] 362 / 2e-123 AT1G14700 419 / 7e-145 purple acid phosphatase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G139100 [exp] 420 / 3e-148 AT1G14700 476 / 2e-169 purple acid phosphatase 3 (.1.2) Potri.015G031300 [exp] 377 / 6e-132 AT1G14700 444 / 5e-157 purple acid phosphatase 3 (.1.2) Potri.015G031400 [exp] 364 / 1e-126 AT3G17790 473 / 1e-168 purple acid phosphatase 17 (.1) Potri.012G042200 [exp] 362 / 1e-125 AT3G17790 437 / 7e-155 purple acid phosphatase 17 (.1) Potri.010G101900 [exp] 351 / 1e-121 AT3G17790 443 / 6e-157 purple acid phosphatase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10034429 pacid=23175870 polypeptide=Lus10034429 locus=Lus10034429.g ID=Lus10034429.BGIv1.0 annot-version=v1.0 ATGAAGGAGAAGGCGACGGCGGTGATGGTGGTCGGAGATTGGGGTAGAAAAGGAGACTACAACCAAAGCCGAGTTGCCTATCAGATGGGGAAGATTGCTG AGGAACTAAATGTGGATTTCGTGATATCAACCGGCGATAACTTCTACGACGACGGATTGCAAGGAGTGGATGACCCTGCTTTCTATCACTCTTTCTCCGA CATCTATACCGCACCCGGCTTGCACAAGCCCTGGTACAACATTCTGGGGAACCATGACTACAGAGGCAACGTCGAAGCACAACTGAGCACATCCCTACAG GACAAAGATTCCAGATGGGTTTGCCACAGATCCTTCATCCTCAACACCAACGTGGCCGACTTTTTCTTCGTCGACACCACTCCCTTCTCCGACAAATACT TCGACGAACCAGAAGACCATACCTATGACTGGAGCGGACTCCTCCCAGACCGCGCCACCTACCTCTCCAACCTCCTCCGCGACCTGGACTCATCCCTCCG AGCGTCCAATGCCAGGTGGAAGATCGTCGTGGGACACCACACCATCAAGAGCGCCGGCCACCACGGCAACACAGTGGAGCTGGAAGCGCATCTGCTTCCT GTTTTGGAGGCCAACAATGTTGACCTCTACGTCAACGGCCACGACCACTGCTTGGAGCACATCAGCAGCAGCCGCACCCGGCTCCAGTTCCTCACCAGCG GGGGTGGGTCCAAGGCGTGGAAAGGTGACATCAGCAAGTGGAATGCTGACGAGATGAAGCTGTACTACGATGGTCAGGGCTTCATGACGCTTCAGATTTC CCCGGCTGACGTGGATGTGGTGTTCTATGATGTCGACGGGAATGTCCTGCATCAATGGAGCACATCTGAACTGTCTCTCTCTCAAATATAG
AA sequence Show only first row Show all	>Lus10034429 pacid=23175870 polypeptide=Lus10034429 locus=Lus10034429.g ID=Lus10034429.BGIv1.0 annot-version=v1.0 MKEKATAVMVVGDWGRKGDYNQSRVAYQMGKIAEELNVDFVISTGDNFYDDGLQGVDDPAFYHSFSDIYTAPGLHKPWYNILGNHDYRGNVEAQLSTSLQ DKDSRWVCHRSFILNTNVADFFFVDTTPFSDKYFDEPEDHTYDWSGLLPDRATYLSNLLRDLDSSLRASNARWKIVVGHHTIKSAGHHGNTVELEAHLLP VLEANNVDLYVNGHDHCLEHISSSRTRLQFLTSGGGSKAWKGDISKWNADEMKLYYDGQGFMTLQISPADVDVVFYDVDGNVLHQWSTSELSLSQI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14700		PAP3, ATPAP3	purple acid phosphatase 3 (.1....		Lus10034429 [exp]	0	1
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10006203 [exp]	6.3	0.9244
AT5G27930			Protein phosphatase 2C family ...		Lus10031475 [exp]	7.4	0.9083
AT3G04970			DHHC-type zinc finger family p...		Lus10004149 [exp]	7.9	0.9043
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10030904 [exp]	9.4	0.9046
AT2G42900			Plant basic secretory protein ...		Lus10031462 [exp]	10.1	0.8723
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027395 [exp]	10.2	0.9120
					Lus10030905 [exp]	10.5	0.9022
AT2G38750		ANNAT4	annexin 4 (.1)		Lus10024171 [exp]	10.7	0.9069
AT5G10750			Protein of unknown function (D...		Lus10026907 [exp]	11.6	0.8489
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031677 [exp]	14.5	0.8966

Compare expression of checked genes

Lus10034429 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.