Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029083 [exp] 304 / 6e-101 AT1G67390 54 / 6e-08 F-box family protein (.1) Lus10037289 [exp] 159 / 2e-45 AT5G02920 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10029003 [exp] 128 / 1e-33 AT3G49030 57 / 3e-08 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Lus10000650 [exp] 117 / 7e-31 ND / Lus10034290 [exp] 110 / 1e-27 AT5G02910 53 / 2e-07 F-box/RNI-like superfamily protein (.1.2) Lus10028940 [exp] 95 / 2e-23 ND / Lus10003695 [exp] 85 / 2e-20 ND / Lus10001581 [exp] 84 / 6e-18 AT4G21120 915 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10035698 [exp] 56 / 3e-09 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034430 pacid=23176033 polypeptide=Lus10034430 locus=Lus10034430.g ID=Lus10034430.BGIv1.0 annot-version=v1.0 ATGGCGGCACAATTTCAATTATCGTCTGGACAGTCTCCAGGAACTCACTCTGGAGAGGTCTGGGTGAGCAGGGAGAGTTTTCCTGTGTGCCTGGCCAATG CTCCTCGTCTGGAGAAATTGAGTTTGAATATGATTCTCGGGATTGATGCCCTGCATATCTATGCTTCTGATTTCCCCAGCTTGAAATCTCTTTCCTTTGA TGGACCGCTGGAGGAAATCCTCCCGCTCAGCTTACCACGAACTCCACTCAAGGCCGGCCACAACTCATGTACGTTGCTGACTGTAGCTCCAGATATGCAT CCCAGGGGAAGCCGGGCGAGAATTTCGGCTCGCATTCTCCGAAATTTAACTTACTCCCATCAGTTGGAAGGACTAGCCAAGTTTGAGATTGATGCTCCGA ATCTGGTAGATTTGTCCATTCGAATCCATGAGCTTCCAATCATCAACGTTGTTAAAGTGGCTCCTAACTGTCGATGTGTAGTTGATTGTTATATATGTGA AGGCAGATTAACAACAGATTGGTTTATTCAGTTGAGGAAGTGTCTCACAACATTAGCTACTCGAATCCACCAGCTGGTTTTCCAGTTAGAGTTCTGGGAA ACGATGGAGTGGTCAATGTTTAATTTGAATCAAGTTGGATGTGAATCTTCTCCTCTAGTAGTACAGCATTTACAACTAGGAACTGACTTGCCTTTGGGAG TCTCTGACATGGAGAAACAAGTTCATGAAAATGAGATGTCATCCGAAGAAGACATTATCAATAGCTCGACTTCCAGATTCACCTCATGA
AA sequence Show only first row Show all	>Lus10034430 pacid=23176033 polypeptide=Lus10034430 locus=Lus10034430.g ID=Lus10034430.BGIv1.0 annot-version=v1.0 MAAQFQLSSGQSPGTHSGEVWVSRESFPVCLANAPRLEKLSLNMILGIDALHIYASDFPSLKSLSFDGPLEEILPLSLPRTPLKAGHNSCTLLTVAPDMH PRGSRARISARILRNLTYSHQLEGLAKFEIDAPNLVDLSIRIHELPIINVVKVAPNCRCVVDCYICEGRLTTDWFIQLRKCLTTLATRIHQLVFQLEFWE TMEWSMFNLNQVGCESSPLVVQHLQLGTDLPLGVSDMEKQVHENEMSSEEDIINSSTSRFTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10034430 [exp]	0	1
AT5G35570			O-fucosyltransferase family pr...		Lus10021557 [exp]	4.5	0.8271
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10011290 [exp]	4.8	0.8537
AT4G38840			SAUR-like auxin-responsive pro...		Lus10029198 [exp]	6.9	0.8403
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Lus10036144 [exp]	11.1	0.8507
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008999 [exp]	13.2	0.8016
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009620 [exp]	13.7	0.7888
AT3G61260			Remorin family protein (.1)		Lus10017811 [exp]	16.2	0.7807
AT1G78230			Outer arm dynein light chain 1...		Lus10020932 [exp]	16.6	0.7311
AT5G55260		EP128, PPX-2, P...	PROTEIN PHOSPHATASE X -2, prot...		Lus10016576 [exp]	17.0	0.7844
AT4G18060			SH3 domain-containing protein ...		Lus10004584 [exp]	17.4	0.7705

Compare expression of checked genes

Lus10034430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.