Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25240 276 / 1e-89 ENTH/VHS/GAT family protein (.1) AT1G68110 253 / 2e-80 ENTH/ANTH/VHS superfamily protein (.1) AT1G14686 181 / 3e-53 ENTH/ANTH/VHS superfamily protein (.1) AT2G01920 129 / 6e-34 ENTH/VHS/GAT family protein (.1) AT4G32285 77 / 7e-15 ENTH/ANTH/VHS superfamily protein (.1.2) AT2G25430 76 / 1e-14 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) AT1G05020 73 / 1e-13 ENTH/ANTH/VHS superfamily protein (.1) AT4G02650 67 / 1e-11 ENTH/ANTH/VHS superfamily protein (.1) AT1G03050 66 / 2e-11 ENTH/ANTH/VHS superfamily protein (.1) AT2G01600 62 / 4e-10 ENTH/ANTH/VHS superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019132 [exp] 444 / 1e-156 AT1G25240 281 / 3e-93 ENTH/VHS/GAT family protein (.1) Lus10035340 [exp] 81 / 6e-16 AT1G05020 489 / 1e-164 ENTH/ANTH/VHS superfamily protein (.1) Lus10012686 [exp] 78 / 3e-15 AT1G03050 642 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10020824 [exp] 78 / 4e-15 AT1G03050 636 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10001502 [exp] 77 / 5e-15 AT2G25430 914 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10002920 [exp] 77 / 5e-15 AT2G25430 909 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10034610 [exp] 66 / 2e-11 AT2G01600 765 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10021796 [exp] 65 / 5e-11 AT2G01600 756 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10007933 [exp] 64 / 2e-10 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G140100 [exp] 238 / 1e-74 AT1G25240 410 / 1e-142 ENTH/VHS/GAT family protein (.1) Potri.002G224500 [exp] 79 / 2e-15 AT1G05020 500 / 2e-170 ENTH/ANTH/VHS superfamily protein (.1) Potri.014G158600 [exp] 77 / 5e-15 AT1G05020 493 / 2e-167 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G255000 [exp] 74 / 5e-14 AT2G25430 866 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Potri.018G026900 [exp] 73 / 9e-14 AT2G25430 857 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Potri.018G128200 [exp] 73 / 1e-13 AT4G32285 626 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.006G118100 [exp] 73 / 1e-13 AT1G03050 605 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G066900 [exp] 69 / 2e-12 AT4G32285 665 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.008G132100 [exp] 64 / 1e-10 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.010G110000 [exp] 62 / 4e-10 AT2G01600 732 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF07651 [flax] [poplar] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Lus10034431 pacid=23176101 polypeptide=Lus10034431 locus=Lus10034431.g ID=Lus10034431.BGIv1.0 annot-version=v1.0 ATGAAGCTGTGGAAGAGAGCAGCGGGGGCTCTCAAGGACCACAACAGCATCCTCCTCGCGACCATCCTGACGCCGCGCACCTCTTCCCGCAACGGCACCC TCGAGGCGGCGATCATCAAGGCCACCAGCCACGACGGGGCCACGATCGACTACAGGAGCGCCCAGCGGGTGGTCGAGTGGATCCGCAGGTCCCCCGTCAG CCTGAAGCCGTTGGTTTGGGGACTTTGCCTTAGGATGGAGAGGACCCACAGCTGGGTGGTGGCGATCAAGGGTTTGATGTTGATGCACGGGATCTTGTGC TGCAAGACGCCGTTGGTTTTGAAGATCGGACGGCTGCCGTTTGATCTTTCGGAATTCAGCGACGGGCATTCCAGCGCTACCAAAATGTGGGGGTTCAATG CTTTTGTTCGTTCGTACTATACTTTCTTGGATCAGCGAACCGCCCTCTTGTACCCCAGCGCAAACAAAAAGGGCAAGACGAACGCCGCAACAACTGAAGA AGAAGAAGATCAAGATCACGAAAACCATGATGATGCCGAGGACGTGATAAAAAAGGCGAAACTATCGGAAGAGTTAGCAAAGCTACAGAAATGGCAGGAA CTTCTCGACCTACTCCTCGAAATAAAGCCATTAGCGGACAACATGAAGCGGAGCCCTCTGATCCTCGAAGCCATGGACTGCGTCACCATCGAGATATTCG ACCTCTACGGCAACATCTGCCGCGGCATGACCTGCTTCCTTATGGAGGCCGGGAAGGCCGAATCCGATTCGGTCCTCCGCATCCTCCAAAAGGCCAGGAC ACAGGGCAAGAACTTGGCGAGCTATTTCGAGTTATGTCGAGCATTCGACGTTTTCAACGCCATGGGGGTTCCAAAAATCGCCCAGATCGTGCCTGATGAT CTGGAAGAGATGGTGGCCAAGAAGAAAGGCTGCGATGACGACGACGATGATTTTAAGTACTCATCATATTCGGATCGTTATAATGACGTTCCGAGCACAA TGAGTATTACTGGTCGGTTACAGACCGTGATAACCGACAAATGGGAGGTGTTTGAGGAGGATCATAATCGTCCGGCTGGTAATTATAATTATAACGGTGA TCAGTACCATCAGTTGGTAGCGCAGTGTGATGTTGGATTTTCGCCGTCGTCGTCGAACCCGTTTGAGGATGATCAGGTGCAGGTTGATGATCTTCTTTCT TTTGTCCCCATCCAGCCGACTGTCTATAAACAAGAAGAACTTCCTGATTTGATTAGTTTCTGA
AA sequence Show only first row Show all	>Lus10034431 pacid=23176101 polypeptide=Lus10034431 locus=Lus10034431.g ID=Lus10034431.BGIv1.0 annot-version=v1.0 MKLWKRAAGALKDHNSILLATILTPRTSSRNGTLEAAIIKATSHDGATIDYRSAQRVVEWIRRSPVSLKPLVWGLCLRMERTHSWVVAIKGLMLMHGILC CKTPLVLKIGRLPFDLSEFSDGHSSATKMWGFNAFVRSYYTFLDQRTALLYPSANKKGKTNAATTEEEEDQDHENHDDAEDVIKKAKLSEELAKLQKWQE LLDLLLEIKPLADNMKRSPLILEAMDCVTIEIFDLYGNICRGMTCFLMEAGKAESDSVLRILQKARTQGKNLASYFELCRAFDVFNAMGVPKIAQIVPDD LEEMVAKKKGCDDDDDDFKYSSYSDRYNDVPSTMSITGRLQTVITDKWEVFEEDHNRPAGNYNYNGDQYHQLVAQCDVGFSPSSSNPFEDDQVQVDDLLS FVPIQPTVYKQEELPDLISF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68110			ENTH/ANTH/VHS superfamily prot...		Lus10034431 [exp]	0	1
AT3G44610			Protein kinase superfamily pro...		Lus10043435 [exp]	3.3	0.8694
AT1G05170			Galactosyltransferase family p...		Lus10039657 [exp]	5.3	0.8163
AT5G02380		MT2B	metallothionein 2B (.1)		Lus10016546 [exp]	8.0	0.8222
AT1G55790			Domain of unknown function (DU...		Lus10000235 [exp]	15.1	0.8187
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032223 [exp]	18.2	0.8141
AT1G55790			Domain of unknown function (DU...		Lus10002759 [exp]	23.0	0.8150
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Lus10031529 [exp]	27.7	0.7783
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10002300 [exp]	27.7	0.7796
AT5G52340		ATEXO70A2	exocyst subunit exo70 family p...		Lus10021283 [exp]	36.5	0.7700
					Lus10008223 [exp]	38.2	0.7627

Compare expression of checked genes

Lus10034431 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.