Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01820 922 / 0 CYCJ18 Leucine-rich repeat protein kinase family protein (.1) AT1G24650 852 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G66150 568 / 0 TMK1 transmembrane kinase 1 (.1) AT3G23750 489 / 1e-158 Leucine-rich repeat protein kinase family protein (.1) AT3G24790 248 / 3e-74 Protein kinase superfamily protein (.1) AT1G76370 247 / 2e-73 Protein kinase superfamily protein (.1) AT1G61860 242 / 1e-71 Protein kinase superfamily protein (.1) AT1G20650 242 / 1e-71 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT3G20530 241 / 3e-71 Protein kinase superfamily protein (.1) AT1G70460 249 / 4e-71 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019131 [exp] 1713 / 0 AT1G66150 981 / 0.0 transmembrane kinase 1 (.1) Lus10027336 [exp] 1001 / 0 AT1G66150 1348 / 0.0 transmembrane kinase 1 (.1) Lus10003807 [exp] 943 / 0 AT1G66150 1221 / 0.0 transmembrane kinase 1 (.1) Lus10039038 [exp] 925 / 0 AT1G66150 1356 / 0.0 transmembrane kinase 1 (.1) Lus10010472 [exp] 863 / 0 AT1G66150 1067 / 0.0 transmembrane kinase 1 (.1) Lus10031944 [exp] 667 / 0 AT2G01820 1008 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10016952 [exp] 482 / 2e-155 AT1G66150 806 / 0.0 transmembrane kinase 1 (.1) Lus10021275 [exp] 478 / 4e-154 AT1G66150 804 / 0.0 transmembrane kinase 1 (.1) Lus10023220 [exp] 404 / 6e-126 AT3G23750 903 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G103000 [exp] 1011 / 0 AT2G01820 1050 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G084000 [exp] 989 / 0 AT1G66150 730 / 0.0 transmembrane kinase 1 (.1) Potri.017G134900 [exp] 603 / 0 AT1G66150 1333 / 0.0 transmembrane kinase 1 (.1) Potri.008G137801 [exp] 585 / 0 AT1G66150 1101 / 0.0 transmembrane kinase 1 (.1) Potri.018G141000 [exp] 494 / 2e-160 AT3G23750 650 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G073900 [exp] 490 / 7e-159 AT3G23750 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G070500 [exp] 488 / 9e-158 AT1G66150 778 / 0.0 transmembrane kinase 1 (.1) Potri.006G203500 [exp] 488 / 1e-157 AT2G01820 528 / 5e-173 Leucine-rich repeat protein kinase family protein (.1) Potri.005G049200 [exp] 471 / 7e-152 AT3G23750 589 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G035900 [exp] 467 / 1e-149 AT3G23750 1044 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10034432 pacid=23175886 polypeptide=Lus10034432 locus=Lus10034432.g ID=Lus10034432.BGIv1.0 annot-version=v1.0 ATGAAGAAGCCTCCAGGAGGAATCAGTACTGCTGCGACGATCACGAGTCTCGTTTCCGCTCTTTGCATCTTGTTTTTGTTTCCCTCGTTTGCAACATCTC AGAGCTCCGATGCAGCCGTCATGCTCAAACTCAAGGACAGTCTCGGCGATCCGGCGAGCCTCGGTTGGTCTGCTTCTGACCCCTGTGAATGGGACGGAGT GACCTGCAATGCCAATAAGGCGGTGACACGTATCAAAATCAGCGGCAAAGGTGTGAAGGGATCTCTCCCACTGGAGCTCTCCGATTTGGCTTCCTTGTCC ATTCTGGAGCTGGACGATAACTTCTTGACCGGTGCGCTGCCCAACTTATCCGGTTCGAGCTCGATTACTTACATAAATGTCATGAACAACAGCTTCACTT CCATTCCCTCGGGTTTCTTCTCCGGTCTGACCGGTCTAACCGGCGTCTTCCTTGACCAAAACCCGTTCCAGCCGTGGACGATCCCCGACGACGTCAAAAG CTTAACCTCGCTGAAGACTTTCTCGGCCACTAACGCTACAATTACGGGATCCATACCTGATTTCTTCTTCAGCGGAGACTCCATGACTGCTCTCAACAGT TTGCATTTGGCTGTCAATCGGTTGCAAGGACCGCTCCCGGCGACTTCTTCAGGATCGTTCCTCCGGTCTCTGGTGCTCAACGGTCAACAAGGCGAGTCCA AGCTCAACGGCAGTATCACAGTGCTGCAGAATATGACCTCCTTGACCGAGGTCTCGTTGCAAATGAACAGTTTCACAGGTCCGATTCCTGACTTTTCCAA ATCTCCGTTGCAGACTCTGAACTTGAGAGATAATCAGATGACCGGTATCATTCCTGCTTCTTTGTCCAAGATTTCCACGCTGCAGAACTTGGTTCTCACT AACAATTTCCTCCAAGGACCGACTCCGAAATTTGATAGTTCGGTTGTTCTGGATATGAGAGCCGGTTCGAATCGTTTCTGTTTGGACGATCCTGGTGCTG GCTGTGATGCTCGGGTTAACAACTTGTTGGCCGCCGTGGAAGCGATGGGATACCCTGCTGTTTTGGCGGATAATTGGAAAGGAAACGATCCTTGCATGAA CTGGAAGGGAATTCAATGTACTGGGAAAGATATTATACTCGTCAATTTCAAAAGCATGGCGCTTACTGGTTCGATTTCGCCTAGTTTCTCATTGATCACT TCATTGCAGAAGTTGTTACTGTCAAACAATGATCTCACCGGTACAATACCGGATGAGCTTGCGAAGCTGCCTAATCTGAAAGTGTTGGATGTCTCGCATA ACAATATTCATGGGAAGGTTCCTAGCTTCAATGGTGTTAGCGTGGTAACTGATGGAAATCCTGATATTGGTAAGGATATTAGTTCACCTCCTGATAGTCA AAGTCCTGGTTCTGATGGGAAGAATGGCAAGAGTAGTGGGAAGATTGTGGGAGCTGTGATTGGAGTTGTTTCTTGTTTGGTTGTGATTGTAGGAGTTGTT GGTTTCTACCTATATTGCAGGAAAAGGAAAAGATACACTAAAGTGCAGAGTCCCAACACGGTGGTTATCCATCCAAATCATTCAGGAAACCAGGATGCTA TCAAGATCACTTTTGCACCTACGTTTAACAGCGTTAATGGTGGTTCTTCTGATAATAATAATATCCATGTGGTTGAAGCGGGTAGTATGGTGATCACGAT CCAGGTTTTGCAAGAGGTGACTGACAACTTCAGCCAAGATAACATACTTGGGAGAGGAGGGTTCGGAACCGTTTACAAAGGGGAACTACCAGATGGGACG AAAATCGCAGTGAAGAGGATGGAGCCTTCTGCAATGAGGGAAAGTGGACTGACGGAGTTCACTTCTGAGATTGCGGTGCTTACGAAAGTCAGGCATCGAC ATCTGGTGTCGCTTCTCGGGTATTGCTTGGACGGGAATGAGAAGATTCTTGTCTATGAGTACATGCCTCAGGGGACTCTTAGTAGGTTTCTGTTCAACTG GAAGAATGAAGGCTTGCAGCCGTTGGAGTGGAAAACAAGACTGACGATTGCGTTGGATGTTGCTAGAGCTGTTGAGTATCTCCATGGTCTTGCCCACCAG AGCTTCATCCATAGGGATCTCAAGCCTTCGAATATTCTTCTTGGTGATGACTTGCGCGCTAAAGTTGCGGATTTTGGGCTAGTTCGTCTTGCCCCCGAGG GACAGAACTCCATATCGACTAGGCTGGCTGGGACTTTTGGATACATGGCTCCAGAATATGCTGTGACCGGACGAGTAACGATCAAGGTGGACGTGTACAG CTTTGGGGTGATACTAATGGAACTAATCTCCGGAAGGAGAGCCCTCGACGAAAGAGCTCCAGCGAACAAACTACACCTAGTACCTTGGTTCCGCAGAATG CACATTGACAAGACCAGATTCAAGGAAGCCATCGACCCATGGATGGAACTAAACAATGAGGAAACGCTTGCGAGCATTACCACGGTTGCTGACCTGGCGG GTCACTGCACTGCAAGGGAGCCGTACCAGAGACCCGACATGAGCCACGTAGTGAACACTCTGTCGTCACTCGCGGAGCTGTGGAAACCAGATCATCGCTC CGGACAAGATTCCGAGGAGGAGTTTGAATCCATCGATCTTCAGATGACGTTGCCTCAGGCGCTGAGGAGGTGGCAGGAAATTGAAGGCGTGGACACCGGC GTGTTCATTTCAGGCGTTGACGATGTTGATGCTGATCAAACTACGCAGAATAGCTTTCGTACTCGGCCGTCTGGATTCGCCGGAACTTTCACTTCTACTG ATGCTCGGTAG
AA sequence Show only first row Show all	>Lus10034432 pacid=23175886 polypeptide=Lus10034432 locus=Lus10034432.g ID=Lus10034432.BGIv1.0 annot-version=v1.0 MKKPPGGISTAATITSLVSALCILFLFPSFATSQSSDAAVMLKLKDSLGDPASLGWSASDPCEWDGVTCNANKAVTRIKISGKGVKGSLPLELSDLASLS ILELDDNFLTGALPNLSGSSSITYINVMNNSFTSIPSGFFSGLTGLTGVFLDQNPFQPWTIPDDVKSLTSLKTFSATNATITGSIPDFFFSGDSMTALNS LHLAVNRLQGPLPATSSGSFLRSLVLNGQQGESKLNGSITVLQNMTSLTEVSLQMNSFTGPIPDFSKSPLQTLNLRDNQMTGIIPASLSKISTLQNLVLT NNFLQGPTPKFDSSVVLDMRAGSNRFCLDDPGAGCDARVNNLLAAVEAMGYPAVLADNWKGNDPCMNWKGIQCTGKDIILVNFKSMALTGSISPSFSLIT SLQKLLLSNNDLTGTIPDELAKLPNLKVLDVSHNNIHGKVPSFNGVSVVTDGNPDIGKDISSPPDSQSPGSDGKNGKSSGKIVGAVIGVVSCLVVIVGVV GFYLYCRKRKRYTKVQSPNTVVIHPNHSGNQDAIKITFAPTFNSVNGGSSDNNNIHVVEAGSMVITIQVLQEVTDNFSQDNILGRGGFGTVYKGELPDGT KIAVKRMEPSAMRESGLTEFTSEIAVLTKVRHRHLVSLLGYCLDGNEKILVYEYMPQGTLSRFLFNWKNEGLQPLEWKTRLTIALDVARAVEYLHGLAHQ SFIHRDLKPSNILLGDDLRAKVADFGLVRLAPEGQNSISTRLAGTFGYMAPEYAVTGRVTIKVDVYSFGVILMELISGRRALDERAPANKLHLVPWFRRM HIDKTRFKEAIDPWMELNNEETLASITTVADLAGHCTAREPYQRPDMSHVVNTLSSLAELWKPDHRSGQDSEEEFESIDLQMTLPQALRRWQEIEGVDTG VFISGVDDVDADQTTQNSFRTRPSGFAGTFTSTDAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10034432 [exp]	0	1
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10016565 [exp]	7.7	0.7015
AT2G26040		RCAR14, PYL2	regulatory components of ABA r...		Lus10024991 [exp]	18.7	0.7090
AT2G34930			disease resistance family prot...		Lus10039522 [exp]	24.4	0.6532
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Lus10030933 [exp]	27.9	0.7081
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10030311 [exp]	44.8	0.6720
AT3G30390			Transmembrane amino acid trans...		Lus10007716 [exp]	48.4	0.6795
					Lus10005948 [exp]	64.1	0.6487
					Lus10030060 [exp]	90.9	0.6508
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Lus10002850 [exp]	93.7	0.5977
AT1G17930			Aminotransferase-like, plant m...		Lus10033313 [exp]	111.7	0.5898

Compare expression of checked genes

Lus10034432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.