Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10360 303 / 7e-104 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) AT4G19645 228 / 2e-74 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) AT1G31300 221 / 1e-71 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019130 [exp] 504 / 0 AT4G10360 315 / 7e-109 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10038335 [exp] 219 / 1e-70 AT1G31300 375 / 3e-132 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10018287 [exp] 219 / 1e-70 AT1G31300 375 / 5e-132 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10036199 [exp] 216 / 1e-69 AT4G19645 379 / 6e-134 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10040622 [exp] 192 / 7e-60 AT1G31300 336 / 4e-116 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G133500 [exp] 316 / 6e-109 AT4G10360 281 / 2e-95 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Potri.005G206000 [exp] 227 / 3e-74 AT1G31300 348 / 2e-121 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Potri.002G056600 [exp] 221 / 8e-72 AT4G19645 352 / 4e-123 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Potri.015G113200 [exp] 217 / 7e-70 AT1G31300 406 / 3e-144 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Potri.012G118100 [exp] 209 / 9e-67 AT1G31300 349 / 7e-122 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03798 [flax] [poplar] TRAM_LAG1_CLN8 TLC domain
Representative CDS sequence Show only first row Show all	>Lus10034433 pacid=23175975 polypeptide=Lus10034433 locus=Lus10034433.g ID=Lus10034433.BGIv1.0 annot-version=v1.0 ATGGAGGACGAAGTTGGATTGCTATTCATCCCCATTGTTGAAAATGCCACTACCCATTTGCTGGCTTCTGCATTTGTGGGTATCCTTATGTGCAGAGCTG TTTACGAATTGACAGGTTATGTTAGTCTTTTGTGGTTCAAAAGCTACTACAACAAACTCACTGCCAAACAAAAAATGGAATGGAACAATAGGGGATTCTC AACATTCCATGCCATCTTTGCAGCATTGCTATCCGTCTACCTCGTGTTGTTTTCAGATCTTTTTAAGGAAGATGATCAAGACGTAATGATGATTGACAAG TACTCCGTTCTGTCCAACTCTGTGTTAGGGGTCTCCGTTGGCTATTTTCTGGCAGACCTTGCAATGATCGTTTGGTATTATCCAGTTCTGGGAGGGGTGG AGTATCTGTTGCATCATGGATTGTCACTCTTCGCAATACTTCTCGCCGTCCTCAGTGGCAATGCTCAGATTTATATACTCATGGTTCTTTTCACTGAGTG CACAACTCCCTTTGTAAATTTAAGATGGTACTTGGATGTTGCTGGTCAGAAAACCTCGAAATTGTACATCTACAATGGAGTCATGCTATTCTTAGGGTGG TTGGTCGCTAGGATTCTTCTGTTCGTCTACTTCTTTGTACACATGTACAACCATTTCGAGCAGGTCAGAACAATATTTCCGCTAGGGTTCTATACAGTGG TGACGGTGCCTCCGACGATGTCGATGATGAATGTGGTATGGTTTTGGAAGATTGCAAAGGGCATGCTGAAAACTGTCTCTAGGGCAAGAAAGAGTCACAA TCGTATTCAGTGA
AA sequence Show only first row Show all	>Lus10034433 pacid=23175975 polypeptide=Lus10034433 locus=Lus10034433.g ID=Lus10034433.BGIv1.0 annot-version=v1.0 MEDEVGLLFIPIVENATTHLLASAFVGILMCRAVYELTGYVSLLWFKSYYNKLTAKQKMEWNNRGFSTFHAIFAALLSVYLVLFSDLFKEDDQDVMMIDK YSVLSNSVLGVSVGYFLADLAMIVWYYPVLGGVEYLLHHGLSLFAILLAVLSGNAQIYILMVLFTECTTPFVNLRWYLDVAGQKTSKLYIYNGVMLFLGW LVARILLFVYFFVHMYNHFEQVRTIFPLGFYTVVTVPPTMSMMNVVWFWKIAKGMLKTVSRARKSHNRIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10360			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10034433 [exp]	0	1
AT3G56140			Protein of unknown function (D...		Lus10017422 [exp]	3.3	0.7780
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10024315 [exp]	5.1	0.7258
AT4G24630			DHHC-type zinc finger family p...		Lus10033527 [exp]	7.1	0.7534
AT1G20080		SYT2, NTMCTYPE1...	synaptotagmin 2, Calcium-depen...		Lus10013563 [exp]	8.9	0.7474
AT3G10540			3-phosphoinositide-dependent p...		Lus10028834 [exp]	9.4	0.7745
AT3G16175			Thioesterase superfamily prote...		Lus10037583 [exp]	21.2	0.7381
AT3G25680			unknown protein		Lus10021714 [exp]	21.7	0.7388
AT5G06440			unknown protein		Lus10021251 [exp]	22.4	0.7278
					Lus10017544 [exp]	25.1	0.7220
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Lus10021337 [exp]	31.3	0.7493

Compare expression of checked genes

Lus10034433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.