Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31360 281 / 7e-83 MED34, ATRECQ2, RECQL2 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) AT1G60930 285 / 2e-81 RECQL4B ,ATRECQ4B RECQ helicase L4B (.1) AT4G35740 274 / 3e-80 ATRECQ3, RECQL3 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) AT1G10930 270 / 4e-76 ATSGS1, RECQL4A ,ATRECQ4A DNA helicase (RECQl4A) (.1) AT3G05740 236 / 1e-67 RECQI1 RECQ helicase l1 (.1) AT5G27680 160 / 4e-40 RECQSIM RECQ helicase SIM (.1) AT1G27880 157 / 3e-39 DEAD/DEAH box RNA helicase family protein (.1) AT5G26742 70 / 7e-12 EMB1138 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) AT2G33730 66 / 1e-10 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G51280 60 / 6e-09 DEAD-box protein abstrakt, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019128 [exp] 454 / 3e-152 ND / Lus10019129 [exp] 305 / 4e-97 AT5G27680 109 / 9e-27 RECQ helicase SIM (.1) Lus10015467 [exp] 281 / 2e-79 AT1G10930 1288 / 0.0 DNA helicase (RECQl4A) (.1) Lus10033289 [exp] 265 / 3e-76 AT1G31360 949 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10042451 [exp] 241 / 7e-69 AT3G05740 814 / 0.0 RECQ helicase l1 (.1) Lus10041840 [exp] 244 / 1e-68 AT4G35740 879 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Lus10026219 [exp] 239 / 3e-68 AT3G05740 816 / 0.0 RECQ helicase l1 (.1) Lus10034749 [exp] 229 / 4e-64 AT1G31360 853 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10028387 [exp] 189 / 4e-50 AT4G35740 778 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G161200 [exp] 1097 / 0 AT1G31360 310 / 2e-93 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.003G015800 [exp] 295 / 1e-84 AT1G10930 1329 / 0.0 DNA helicase (RECQl4A) (.1) Potri.003G104300 [exp] 278 / 9e-82 AT1G31360 986 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.005G107400 [exp] 278 / 2e-81 AT4G35740 850 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Potri.005G019800 [exp] 241 / 3e-69 AT3G05740 828 / 0.0 RECQ helicase l1 (.1) Potri.010G056500 [exp] 166 / 4e-42 AT1G27880 935 / 0.0 DEAD/DEAH box RNA helicase family protein (.1) Potri.005G026400 [exp] 158 / 1e-39 AT5G27680 875 / 0.0 RECQ helicase SIM (.1) Potri.005G000500 [exp] 73 / 7e-13 AT5G26742 885 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.005G000100 [exp] 72 / 1e-12 AT5G26742 924 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.010G063600 [exp] 67 / 5e-11 AT3G16840 782 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0426 [flax] [poplar] HRDC-like PF00570 [flax] [poplar] HRDC HRDC domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0123 [flax] [poplar] HTH PF09382 [flax] [poplar] RQC RQC domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10034434 pacid=23175877 polypeptide=Lus10034434 locus=Lus10034434.g ID=Lus10034434.BGIv1.0 annot-version=v1.0 ATGGCCACTGGCAGTGGAAAGTCCTTGTGTTATCAGCTTCCGCCATTGCTAGTTAATAAGACTGCTGTTGTCGTGAGCCCTCTTATATCTCTCATGCAAG ATCAGGTGATGAGTTTGAAACAGCAGGGTATCAGTGCTGAGTACCTTGGAAGTGCTCAGACCGATCAATCCGTGGATCGTAGAGCCCAGATGGGTGAATT TCGTTTGCTGTTCATGACTCCTGAAAAGGCCTGCGTCCTTTCCCACGGCTTCTGGTCGAAGTTATTAGAAGCTGGAATTTGTCTCCTTGCTGTCGACGAA GCACATTGCATATCAGAATGGGGGCATGACTTCAGGGTGGAATACAAACAGTTAGACAGGTTGCGAGCGATACTAGTGGACATACCATTTGTTGGCTTAA CTGCTACGGCTACTGATAAGGTCAGAAGGGATATCATAAATTCCCTGAAGATGGATGACCCTTACATTGCCATTGGTACATTTGACCGTAAAAATCTCTT CTACGGTGTCAAACATTTTAGTAGGAGTTCAGACTTTCTTGAAAACCTTGTGGCTGATTTTTCAAAATCAGCCGAGATGACTGGGCCAACCATCATTTAC TGTACAACCATTAAAGATGTTGAGCAGGTATTCAAGGCATTTGAAGAGGCAGGAATGAAGTCTGGAATGTATCATGGCCAAATGAGCAACAAAGCTAAGC AGGAGTCCCACAGATCCTTTATAAGAGATGAGTTGCAGGTCATGGTTGCTACAATTGCTTTTGGGATGGGTATTGACAAGCCAAACGTGAGGCAAGTGAT TCACTATGGGTGTCCAAAAAGCCTTGAGTCCTATTACCAGGAAAGTGGACGCTGTGGTCGAGATGGTATAGCCTCTGTCTGTTGGCTTTACTATAGCAGA AGTGACTTTGGGAAAGCTGAATTTTACTGTGGAGAAGCTAAAACAGAGAATCAAAGGAGGGCTATTATGGAATCATTGATGACTGCTCAGAGATATTGCT CAATTACTGCTTGCAGAAGACAGTATTTGCTTGACCACTTTGGAGAAGCTTCTCCATCTGCCAATTGTGGAAATTGTGATAATTGCTTGGGTTCAAAAAA GGAACATGATGTATCTCGAGAAGCTTTCCTTTTGATGGCCTGCATTCTATCTTGTCGGGGTAACTGGGGCCTGAATATGCTTGTAGATATTCTACGTGGT TCCCGAGCAAAAAAAATCGTTGACAACCAATTTCATAAGCTTCCTCTTCATGGACTTGGGAAAGAACGCACATCTGATTGGTGGAAATCTTTGGCTTACC AGTTAATTTCTCATGGTTACCTGGAGGAGGTTGTTTCGGACATATATAGAACTATCAGTGTTAGCTCAAAAGGGAAGGATTTCGTTAGTTCTTCCAGACT TGATCACCAACCACCACTGGTTCTACCACTGAGCAGTGAAATGACAAACGATGAGGACCATCAAAACAATACTAATGGAGAGTCGAATGGTTCGTCAGCT ACAGAATGTGAGGGATTTTCGCAGGCCGAGTCACAATTTTACCGTTCACTCTTAGAAGAGAGAGCCAACCTTGCAAGAAGAGTTGGAACTGCTCCATATG CGGTCTGCGGCGATCAAACAATCAAACGACTTGCTCTTTTACGGCCATCCACCAAAGCAAGACTAGCGAATGTGGATGGTGTCAATCAGAGCATGCTAAT ATACAGAGTGCTTCTCTTGCAGCATCTTGTTACGACACACGGGGATCATCTCCTTGAAACCATTAAGCATCTAGCAAAAGAGCTAAATCTGAGTTTGGAC GGTGAAGCAAGCGCACTGATCTTTAGTACAAATAAAGCTGATCAGGTGGCCAATTCTCAAAGGAAGTTAACACCGGCTAAATTTCAAGCCTGGAAGATGT GGAGTGAAGAAGGTCTATCCATCCACCAAATTGCAACCACAATTAACTTTTCCAGCCTTTTATGCACCTCATTGCTCACAATGTTTCCGTTGAAGAACTC CCCTGGTAGAGCTACTTCCATCAAACCGCAAACTGTTCTTGAATATCTTCTAGAGGCTGCGCAACAAGGATTGAGCCTTGATTGGACCAGAATTTCTCAC GAGGTTGGTCTGACGAATGAAATGATCTCCGCTATTCTTCGTGCCATCTCGAAGGTTGGATCGAGCGATAAGCTGAAGCCCATCAAAGAGGAATTACCGG AAGAGATAAGCTACACGCAGATCAAGACTTGTCTTGTAATGCAAAAATGTGGAATGTGTCCGGAGATTGCTTCAGCTCCTGAGAAGATATCTGAATTGCT TTCCAGCGATGTTAGTCACAAAGAAGGCGGATCACTTGAACTTGAAAGTTCAGTAGATATGATGAATGCTGATGGACTCCCCATAGGAAAGCGTCAGAAG GTAGATGATCTTCAACTGAGTTCAGCATCACCGGTGGCAACAGAGGACGCCATTCTGGATTGGATTAAGAAGTATGATGATGGGGTTTCGGCAGCTGATA TTCTGAAGCATTTCAAGGGCTCGGAAGAGGAATCTGTCGTAGCGATGATCAACAGCCTTGAATGCGAGTTTGTGATATATAAGAAGAACAATGCGTATAG AATTCTGTGA
AA sequence Show only first row Show all	>Lus10034434 pacid=23175877 polypeptide=Lus10034434 locus=Lus10034434.g ID=Lus10034434.BGIv1.0 annot-version=v1.0 MATGSGKSLCYQLPPLLVNKTAVVVSPLISLMQDQVMSLKQQGISAEYLGSAQTDQSVDRRAQMGEFRLLFMTPEKACVLSHGFWSKLLEAGICLLAVDE AHCISEWGHDFRVEYKQLDRLRAILVDIPFVGLTATATDKVRRDIINSLKMDDPYIAIGTFDRKNLFYGVKHFSRSSDFLENLVADFSKSAEMTGPTIIY CTTIKDVEQVFKAFEEAGMKSGMYHGQMSNKAKQESHRSFIRDELQVMVATIAFGMGIDKPNVRQVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYSR SDFGKAEFYCGEAKTENQRRAIMESLMTAQRYCSITACRRQYLLDHFGEASPSANCGNCDNCLGSKKEHDVSREAFLLMACILSCRGNWGLNMLVDILRG SRAKKIVDNQFHKLPLHGLGKERTSDWWKSLAYQLISHGYLEEVVSDIYRTISVSSKGKDFVSSSRLDHQPPLVLPLSSEMTNDEDHQNNTNGESNGSSA TECEGFSQAESQFYRSLLEERANLARRVGTAPYAVCGDQTIKRLALLRPSTKARLANVDGVNQSMLIYRVLLLQHLVTTHGDHLLETIKHLAKELNLSLD GEASALIFSTNKADQVANSQRKLTPAKFQAWKMWSEEGLSIHQIATTINFSSLLCTSLLTMFPLKNSPGRATSIKPQTVLEYLLEAAQQGLSLDWTRISH EVGLTNEMISAILRAISKVGSSDKLKPIKEELPEEISYTQIKTCLVMQKCGMCPEIASAPEKISELLSSDVSHKEGGSLELESSVDMMNADGLPIGKRQK VDDLQLSSASPVATEDAILDWIKKYDDGVSAADILKHFKGSEEESVVAMINSLECEFVIYKKNNAYRIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Lus10034434 [exp]	0	1
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10004453 [exp]	13.0	0.8755
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Lus10015030 [exp]	14.7	0.8061
AT1G04730		CTF18	CHROMOSOME TRANSMISSION FIDELI...		Lus10043134 [exp]	22.6	0.8667
AT2G29680		CDC6, ATCDC6	cell division control 6 (.1.2)		Lus10009446 [exp]	24.9	0.8661
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Lus10032469 [exp]	26.1	0.8599
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Lus10042967 [exp]	27.5	0.8564
AT1G35530			DEAD/DEAH box RNA helicase fam...		Lus10009444 [exp]	29.1	0.8604
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Lus10009366 [exp]	35.7	0.8595
AT1G29630			5'-3' exonuclease family prote...		Lus10011991 [exp]	38.1	0.8461
					Lus10026146 [exp]	38.8	0.8540

Compare expression of checked genes

Lus10034434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.