Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57610 333 / 5e-114 Protein of unknown function (DUF607) (.1), Protein of unknown function (DUF607) (.2), Protein of unknown function (DUF607) (.3) AT1G09575 322 / 1e-109 Protein of unknown function (DUF607) (.1) AT2G23790 173 / 3e-51 Protein of unknown function (DUF607) (.1) AT5G42610 161 / 6e-47 Protein of unknown function (DUF607) (.1) AT4G36820 161 / 2e-46 Protein of unknown function (DUF607) (.1) AT5G66650 155 / 2e-44 Protein of unknown function (DUF607) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019127 [exp] 426 / 7e-151 AT1G57610 229 / 2e-75 Protein of unknown function (DUF607) (.1), Protein of unknown function (DUF607) (.2), Protein of unknown function (DUF607) (.3) Lus10016799 [exp] 199 / 9e-61 AT2G23790 362 / 1e-124 Protein of unknown function (DUF607) (.1) Lus10022496 [exp] 194 / 6e-59 AT2G23790 371 / 2e-128 Protein of unknown function (DUF607) (.1) Lus10019663 [exp] 171 / 1e-50 AT2G23790 313 / 4e-106 Protein of unknown function (DUF607) (.1) Lus10000580 [exp] 169 / 7e-50 AT2G23790 314 / 1e-106 Protein of unknown function (DUF607) (.1) Lus10016305 [exp] 147 / 7e-41 AT2G23790 264 / 1e-86 Protein of unknown function (DUF607) (.1) Lus10010793 [exp] 144 / 1e-39 AT5G42610 270 / 2e-89 Protein of unknown function (DUF607) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G161300 [exp] 389 / 2e-135 AT1G09575 316 / 8e-108 Protein of unknown function (DUF607) (.1) Potri.019G133400 [exp] 380 / 7e-132 AT1G09575 317 / 3e-108 Protein of unknown function (DUF607) (.1) Potri.005G127800 [exp] 160 / 4e-46 AT2G23790 335 / 2e-114 Protein of unknown function (DUF607) (.1) Potri.007G031400 [exp] 157 / 5e-45 AT2G23790 333 / 1e-113 Protein of unknown function (DUF607) (.1) Potri.014G041000 [exp] 150 / 2e-42 AT5G42610 288 / 3e-96 Protein of unknown function (DUF607) (.1) Potri.002G133400 [exp] 150 / 4e-42 AT2G23790 290 / 1e-96 Protein of unknown function (DUF607) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04678 [flax] [poplar] MCU Mitochondrial calcium uniporter
Representative CDS sequence Show only first row Show all	>Lus10034435 pacid=23176091 polypeptide=Lus10034435 locus=Lus10034435.g ID=Lus10034435.BGIv1.0 annot-version=v1.0 ATGCGGAGGAGATTGTCCTTCCGGCCACCGTCTTGGGCCGCCGCTCTTGGCCAAACTACCTCCTCGCCACCGCTTCCAACCAATGGATTCGGATTCCATC ACCTCCACTCTCCTCCGTTGCCCTCCTCCTTTTTTACTTCTTCTTTTTCTTCGTCTGTTGAATCTTCCGTTCCGCGTTTTAGTTACGGCGGACGGCAGAG TCTGGCCGAAACCGTGTTTTTCTCGCCGCGTCTGCTGCAGCTGACTTCTGCTGCATCGTCGTCCTTTTCACATTCGTATTCCTCCCACGCGAACAATGAC GGCAATGCCACGGTATCTCCTCCACCGTCTTCCGATGATGCCGAGGCGGTGAGTTGCACGGAGGCGAAGAGGCTGATGAGATTGGTGAACGTGGAGGCGC TCAAGAGCAAGCTAGGGATGGAAGGGAAAGAGGTCATCCCTTACGCGAACCTTATCGCCGCTTGCCAATCTATGGGCGTAGCCCGTTCTCACGATGAGGC CGTTTCTTTTGCTCGGATCCTCGACGATGCCGGCGTTGTTCTTCTCTTTCGCGATAAGGTCTATCTTCATCCTGATAAGGTGGTGGATCTGATCCGAAGG GCAGTACCACTGGCACTAACACCAGACAATGATCCGATGAGGGACGAGCTGAAGATCCTGCGGGAAAGGAAGGAAGACATCGACGTACAAGCTCACAGAC AGGTGCGGCGCATCCTCTGGGGAGGACTGGGACTAGCGGTGGTACAGGTGGCGCTGTTCTTCAGGCTGACATTCTGGGAATTCTCATGGGATGTTATGGA ACCTATTGCATTCTTCACCACCACAACCGGGATCGTTATCGGCTACGCGTACTTCCTCTTCACCTCAAGAGACCCGACTTACCAGGACCTGATGAAGAGG TTGTTCCTGTCAAGGCAACGGAAGCTGCTCAAGAAGCACAACTTTGATGTGCAGCGAATGAAGGAGTTGCAGTGCAAATGCAAGACTCCGTTCGATGCCA GCACCTCGATTCGGAACCGCGTAGGGACGGAGCTGGAGCTCGATGATTCCTTCAACAAAGACTAA
AA sequence Show only first row Show all	>Lus10034435 pacid=23176091 polypeptide=Lus10034435 locus=Lus10034435.g ID=Lus10034435.BGIv1.0 annot-version=v1.0 MRRRLSFRPPSWAAALGQTTSSPPLPTNGFGFHHLHSPPLPSSFFTSSFSSSVESSVPRFSYGGRQSLAETVFFSPRLLQLTSAASSSFSHSYSSHANND GNATVSPPPSSDDAEAVSCTEAKRLMRLVNVEALKSKLGMEGKEVIPYANLIAACQSMGVARSHDEAVSFARILDDAGVVLLFRDKVYLHPDKVVDLIRR AVPLALTPDNDPMRDELKILRERKEDIDVQAHRQVRRILWGGLGLAVVQVALFFRLTFWEFSWDVMEPIAFFTTTTGIVIGYAYFLFTSRDPTYQDLMKR LFLSRQRKLLKKHNFDVQRMKELQCKCKTPFDASTSIRNRVGTELELDDSFNKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G57610			Protein of unknown function (D...		Lus10034435 [exp]	0	1
AT4G21920			unknown protein		Lus10001143 [exp]	1.7	0.9616
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10014068 [exp]	5.3	0.9610
AT1G18270			ketose-bisphosphate aldolase c...		Lus10008754 [exp]	6.0	0.9590
AT2G37380		MAKR3	MEMBRANE-ASSOCIATED KINASE REG...		Lus10025286 [exp]	6.3	0.9571
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10002134 [exp]	7.4	0.9437
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10028227 [exp]	9.3	0.9593
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10042934 [exp]	9.9	0.9483
AT1G61215		BRD4	bromodomain 4 (.1)		Lus10011227 [exp]	11.5	0.9325
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Lus10037750 [exp]	15.0	0.9363
AT2G05910			Protein of unknown function (D...		Lus10033432 [exp]	19.2	0.9495

Compare expression of checked genes

Lus10034435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.