Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58240 236 / 5e-79 FHIT FRAGILE HISTIDINE TRIAD (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019126 [exp] 294 / 3e-102 AT5G58240 236 / 6e-81 FRAGILE HISTIDINE TRIAD (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G133200 [exp] 197 / 1e-64 AT5G58240 158 / 1e-50 FRAGILE HISTIDINE TRIAD (.1.2) Potri.013G161100 [exp] 179 / 4e-57 AT5G58240 149 / 8e-47 FRAGILE HISTIDINE TRIAD (.1.2) Potri.019G133101 [exp] 58 / 1e-10 AT5G58240 71 / 3e-16 FRAGILE HISTIDINE TRIAD (.1.2) Potri.002G248800 [exp] 41 / 0.0002 AT5G48545 227 / 3e-76 histidine triad nucleotide-binding 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0265 [flax] [poplar] HIT PF01230 [flax] [poplar] HIT HIT domain
Representative CDS sequence Show only first row Show all	>Lus10034436 pacid=23176037 polypeptide=Lus10034436 locus=Lus10034436.g ID=Lus10034436.BGIv1.0 annot-version=v1.0 ATGATCCAACTCAAATATCAACCTGGTGAAAGTAGCAGAATTTGGAGGTCCATTCGGGAATCGGCCCAACCAACCAATACAAAGCCCATCCACTGCACTC ACAGATCAATGTTGTCACTTGAGAGGCAGATCGGAGACGACGATGATGGTTGCAAATCCATTATTATTTCACCATCTCCTCCGCCGGCCGAATTGCCTCC CGCTCTTACTCTCTCACCTTGGAACCACAACAGTAAGAAGAGCAGCAGCACGAGGGATCTCCCAATTGCGCGCCATCTCATTCTCATTCTTACCTTCCAT TTCTTGCTCCCTTCAGGTGCCTCCGCCATGTCCACAGAGCAATCCTATGCTTTCGGCCCTTACAAGATTCACCACAAGGAAGTCTTCTACTCCACTGACC ACTCCTACGCTATGGTCAATCTCCGTCCCCTCCTCCCTGTAAAGCGATTCGGTGATCTAACTGCTGCTGAGACTAGTGATCTCTGGCTTACTGCACAGAA GGTTGGATCTCAGCTGGAGCATTTCCACAAAGCAACATCCCTCACATTTGCAATCCAAGATGGGCCGCAGGCAGGGCAGACAGTGCCCCATGTTCATATC CACGTTCTCCCAAGGAAGGGCGGCGATTTTGAGAACAACGACGAGATCTATGATGCTATAGACGTAAAAGAAAAGGAACTGAACCAGAAACTGGATTTGG ACAAAGAAAGAAAGGACAGGAGCCTTGAAGAGATGGGGCAAGAAGCTGAAGAATATAGGAAGCTGTTTCTACAGTAG
AA sequence Show only first row Show all	>Lus10034436 pacid=23176037 polypeptide=Lus10034436 locus=Lus10034436.g ID=Lus10034436.BGIv1.0 annot-version=v1.0 MIQLKYQPGESSRIWRSIRESAQPTNTKPIHCTHRSMLSLERQIGDDDDGCKSIIISPSPPPAELPPALTLSPWNHNSKKSSSTRDLPIARHLILILTFH FLLPSGASAMSTEQSYAFGPYKIHHKEVFYSTDHSYAMVNLRPLLPVKRFGDLTAAETSDLWLTAQKVGSQLEHFHKATSLTFAIQDGPQAGQTVPHVHI HVLPRKGGDFENNDEIYDAIDVKEKELNQKLDLDKERKDRSLEEMGQEAEEYRKLFLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58240		FHIT	FRAGILE HISTIDINE TRIAD (.1.2)		Lus10034436 [exp]	0	1
					Lus10022880 [exp]	7.9	0.7833
AT3G02220			unknown protein		Lus10043249 [exp]	9.2	0.7963
					Lus10009774 [exp]	10.0	0.7582
AT4G25500		ATRSP40, AT-SRP...	ARABIDOPSIS THALIANA ARGININE/...		Lus10038883 [exp]	13.4	0.7102
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10040036 [exp]	16.2	0.7600
AT1G54250		NRPE8A, NRPB8A,...	RNA polymerase Rpb8 (.1)		Lus10039177 [exp]	19.2	0.7243
AT5G19490	CCAAT		Histone superfamily protein (....		Lus10026780 [exp]	20.6	0.7502
AT4G28706			pfkB-like carbohydrate kinase ...		Lus10000210 [exp]	25.7	0.7454
AT4G30820			cyclin-dependent kinase-activa...		Lus10022901 [exp]	27.0	0.6983
AT1G51610			Cation efflux family protein (...		Lus10033367 [exp]	28.1	0.6975

Compare expression of checked genes

Lus10034436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.