Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23630 185 / 3e-57 RTNLB1, BTI1 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) AT2G46170 182 / 3e-56 Reticulon family protein (.1.2) AT5G41600 179 / 5e-55 RTNLB4, BTI3 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) AT4G11220 178 / 1e-54 RTNLB2, BTI2 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) AT3G61560 175 / 1e-53 Reticulon family protein (.1.2) AT1G64090 166 / 5e-50 RTNLB3 Reticulan like protein B3 (.1.2) AT4G01230 156 / 2e-46 Reticulon family protein (.1) AT3G10260 132 / 4e-37 Reticulon family protein (.1.2.3) AT3G18260 109 / 9e-29 Reticulon family protein (.1) AT3G10915 102 / 5e-26 Reticulon family protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019125 [exp] 458 / 8e-165 AT4G23630 204 / 7e-65 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10036405 [exp] 186 / 7e-58 AT2G46170 320 / 8e-111 Reticulon family protein (.1.2) Lus10041080 [exp] 186 / 8e-58 AT2G46170 320 / 5e-111 Reticulon family protein (.1.2) Lus10027548 [exp] 184 / 5e-57 AT1G64090 316 / 2e-109 Reticulan like protein B3 (.1.2) Lus10027546 [exp] 180 / 2e-55 AT4G11220 307 / 5e-106 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Lus10032313 [exp] 177 / 3e-54 AT4G23630 318 / 1e-109 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10038833 [exp] 176 / 5e-54 AT5G41600 308 / 3e-106 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) Lus10014948 [exp] 176 / 5e-54 AT4G23630 306 / 3e-105 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10028753 [exp] 188 / 8e-54 AT5G35360 888 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G160900 [exp] 236 / 1e-77 AT4G11220 193 / 4e-61 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Potri.001G097700 [exp] 196 / 1e-61 AT4G23630 314 / 2e-108 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.012G035600 [exp] 192 / 2e-60 AT4G23630 296 / 2e-101 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.003G133600 [exp] 191 / 8e-60 AT4G23630 284 / 8e-97 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.014G091200 [exp] 187 / 2e-58 AT2G46170 318 / 3e-110 Reticulon family protein (.1.2) Potri.002G165400 [exp] 186 / 5e-58 AT2G46170 311 / 1e-107 Reticulon family protein (.1.2) Potri.015G027300 [exp] 185 / 2e-57 AT4G23630 310 / 6e-107 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.002G055600 [exp] 160 / 7e-48 AT3G10260 330 / 2e-115 Reticulon family protein (.1.2.3) Potri.005G206800 [exp] 148 / 3e-43 AT3G10260 315 / 3e-109 Reticulon family protein (.1.2.3) Potri.015G044300 [exp] 131 / 4e-37 AT3G18260 251 / 1e-84 Reticulon family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF02453 [flax] [poplar] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Lus10034437 pacid=23175922 polypeptide=Lus10034437 locus=Lus10034437.g ID=Lus10034437.BGIv1.0 annot-version=v1.0 ATGACAGATGCAGTACTGGATCAGCTTGGATCGGAGGTGGTGATGAAAGAGGTGATCGAGAAACAACAAACGCCGTTACCTGCTCCGATCGCCGCTGATG TTAGCTACGTGGATCACGACATTAACCTCGCCGCCACCGCCGCCGCCTCCGACGATTCCTCCAACTCTTCCGATTCCGAGATCGACAATCACATCATCAT GTCCCAGTCCACCGGCAAGAACCGCCTCTTCGGCCGCCAGAAGCCTCTCCACTTGGTCCTCGGTGCCGGAAAACGAGCGGACTTAATACTGTGGCGAAAC AAGCAACTGACGGGAGGCATATTCGGCGGAGTAACTTTCGTGTGGCTCTGTTTTGAATGGAGAGGATATAATTTAATTACTTTTATTTGCCACTCCCTCA TCTTGCTCCTCGTCATGCTCTTCCTCAGCTCCAATTTAGCCGCCATCATCAACGTATCTCCAGTTGAATTGCCGAAAGGGAATGTATCAGAGCGCGTCAT CGCGTCTACTCTTATCACCCTCACGTCTCAATTGAACTGCGCAATCGCTACTTTCCGCGACGTTGCCTCTGGCAAGGACTTGAAGAAGTTTATCAAGGTG ATAGTGTCGTTATGGTTCATCTCTGTAATCGGAAGCTGGTTCAATTTCTTGACCCTGTTTTACCTAGATGCGGTGTTGTTTGTGCAAGCTGCAGTGTTTG TGATAGTGTTGACGGTGCCATTAGCGTATGAGAAGAACGAGGATGTGGTGGATAACTATGCAGAGAAGGCGTGGATAGAAATCAAAAAGCAATACGCAGT ACTGGATGACAAGTACCTCCATAAACTCCCATTTTTCTCTTCTCTGAAGGCTCACAAACAGCATTGA
AA sequence Show only first row Show all	>Lus10034437 pacid=23175922 polypeptide=Lus10034437 locus=Lus10034437.g ID=Lus10034437.BGIv1.0 annot-version=v1.0 MTDAVLDQLGSEVVMKEVIEKQQTPLPAPIAADVSYVDHDINLAATAAASDDSSNSSDSEIDNHIIMSQSTGKNRLFGRQKPLHLVLGAGKRADLILWRN KQLTGGIFGGVTFVWLCFEWRGYNLITFICHSLILLLVMLFLSSNLAAIINVSPVELPKGNVSERVIASTLITLTSQLNCAIATFRDVASGKDLKKFIKV IVSLWFISVIGSWFNFLTLFYLDAVLFVQAAVFVIVLTVPLAYEKNEDVVDNYAEKAWIEIKKQYAVLDDKYLHKLPFFSSLKAHKQH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10034437 [exp]	0	1
AT2G05910			Protein of unknown function (D...		Lus10033433 [exp]	2.6	0.8852
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10028797 [exp]	8.1	0.8718
AT3G14250			RING/U-box superfamily protein...		Lus10024093 [exp]	9.6	0.8691
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10030799 [exp]	10.0	0.8480
AT2G46550			unknown protein		Lus10012748 [exp]	10.1	0.8465
AT5G14280	GeBP		DNA-binding storekeeper protei...		Lus10036981 [exp]	11.8	0.8321
AT1G20180			Protein of unknown function (D...		Lus10017286 [exp]	11.8	0.8263
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10021552 [exp]	19.6	0.8455
AT5G18980			ARM repeat superfamily protein...		Lus10034018 [exp]	20.2	0.8232
AT5G18980			ARM repeat superfamily protein...		Lus10001111 [exp]	20.8	0.8224

Compare expression of checked genes

Lus10034437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.