Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58260 286 / 1e-98 NdhN NADH dehydrogenase-like complex N, oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019123 [exp] 259 / 2e-88 AT5G58260 204 / 1e-67 NADH dehydrogenase-like complex N, oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G160600 [exp] 300 / 6e-104 AT5G58260 280 / 3e-96 NADH dehydrogenase-like complex N, oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11909 [flax] [poplar] NdhN NADH-quinone oxidoreductase cyanobacterial subunit N
Representative CDS sequence Show only first row Show all	>Lus10034438 pacid=23175964 polypeptide=Lus10034438 locus=Lus10034438.g ID=Lus10034438.BGIv1.0 annot-version=v1.0 ATGGCGACAGTAAGAGTAGCCACCTCTTCTTCCTGCTGCCAGTTGCAGGCCGGTGGCCACCACCGTCTGCGGAGGGACGATGAAGGCAAAGGCTGGTGGT CATCATCGATGAGGAGACAAAAGCCAAAGAGAGCAGCGGCAATAACTTGCAGCGTCAGCGGCGGCGAACGGAAGCGGAGAGGGATAGCAGACTACATAGG AGGTGATCTGGTGAGGTTTGATTTAGGACAGTGGATGTCTGACGTGGAAGAGCACAAATCACTGGCCATTTATCCGCCTCACGAGGGAGGCTACGAAGGT CGCTACTTCACTAGGCTTAGATACGACGGCTACTACTTCCTCGACGTCTCTGCTCGTGGACTCGGCGACCCGGAGTCCACCCTCACCAAAGTTCATCCCG TTTGCCCCGCACATTTGGGGAAGCAACCTATTGCTCGTTGGTATTTCCCGCCGGAGGTTGACTATAGACTTGCTGCGCTACCCTCCGATGCTAAAGGACT CGTGGTCTGGGTCACAGAAGCCAAGGTTCTATCCAAGGCAGAGCTGCAGTTCCTGGCATTGCTTCCAACCCTCCGCCCCAAAGTTCGTGTCATTGCTGAA TGCGGCAACTGGAGGCAGTTTGTGTGGAAGCCGCTCAAAGAGATTGCTGGACTAACCACTCAGCCTGAGGTTGCCGCCTGA
AA sequence Show only first row Show all	>Lus10034438 pacid=23175964 polypeptide=Lus10034438 locus=Lus10034438.g ID=Lus10034438.BGIv1.0 annot-version=v1.0 MATVRVATSSSCCQLQAGGHHRLRRDDEGKGWWSSSMRRQKPKRAAAITCSVSGGERKRRGIADYIGGDLVRFDLGQWMSDVEEHKSLAIYPPHEGGYEG RYFTRLRYDGYYFLDVSARGLGDPESTLTKVHPVCPAHLGKQPIARWYFPPEVDYRLAALPSDAKGLVVWVTEAKVLSKAELQFLALLPTLRPKVRVIAE CGNWRQFVWKPLKEIAGLTTQPEVAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58260		NdhN	NADH dehydrogenase-like comple...		Lus10034438 [exp]	0	1
AT4G13670		PTAC5	plastid transcriptionally acti...		Lus10000759 [exp]	1.0	0.9525
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Lus10013591 [exp]	4.2	0.9188
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Lus10022384 [exp]	5.3	0.9178
AT3G14420			Aldolase-type TIM barrel famil...		Lus10005590 [exp]	9.4	0.9207
AT1G15980		PnsB1, NDH48, N...	Photosynthetic NDH subcomplex...		Lus10026086 [exp]	12.5	0.9111
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10017574 [exp]	15.5	0.9137
AT4G15545			unknown protein		Lus10034001 [exp]	17.1	0.8435
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10001339 [exp]	17.5	0.9023
AT2G36970			UDP-Glycosyltransferase superf...		Lus10021438 [exp]	18.2	0.8379
AT5G52030			TraB family protein (.1.2)		Lus10038884 [exp]	21.0	0.8917

Compare expression of checked genes

Lus10034438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.