Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63250 159 / 7e-46 DEA(D/H)-box RNA helicase family protein (.1) AT2G07750 154 / 6e-44 DEA(D/H)-box RNA helicase family protein (.1) AT2G37920 84 / 2e-20 EMB1513 embryo defective 1513, copper ion transmembrane transporters (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019121 [exp] 232 / 1e-79 AT1G63250 166 / 1e-48 DEA(D/H)-box RNA helicase family protein (.1) Lus10002043 [exp] 89 / 5e-21 AT2G37920 259 / 4e-84 embryo defective 1513, copper ion transmembrane transporters (.1) Lus10024339 [exp] 86 / 4e-20 AT2G37920 245 / 8e-79 embryo defective 1513, copper ion transmembrane transporters (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G107300 [exp] 164 / 8e-48 AT1G63250 841 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.003G124100 [exp] 147 / 1e-41 AT1G63250 883 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.006G092100 [exp] 86 / 2e-20 AT2G37920 243 / 1e-79 embryo defective 1513, copper ion transmembrane transporters (.1) Potri.016G103600 [exp] 84 / 9e-20 AT2G37920 250 / 4e-82 embryo defective 1513, copper ion transmembrane transporters (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034440 pacid=23175953 polypeptide=Lus10034440 locus=Lus10034440.g ID=Lus10034440.BGIv1.0 annot-version=v1.0 ATGCAATTGGCCAGGGTTTCCGGTCTCCTCGGCACCCGCTTATTCGTCCGGTTCATGGGCGGAGGGCCACGTACATTCCCCGGCGGCTTAAACAAGTGGC AATGGAAGCGTATGCACGAGAAGCAAGCTCGAGAGAAGGAAAAACGCCTCCTTGACCAAGAAAAGCAACTCTACCAAGCCAGAATACGATCCCAAATCCG GTCTAAACTTGTCGATGGAGACCCCGGTGACATCAATTCCTCCTCCGGCTCTGCTTCTGGGGGTGCCAATTATAACCCTATGACTCCCAAAGACCACGTC AAAGCTCTAGCTGATCGTTTCATGAAGGAAGGAGCTGAGGATTTGTGGAATGAGGATGATGGACCTTTGCAAAGCCCACTCCCAAGACCAGCTGGACGTT CTGAGACGATGAGTCGTGAACAGGGTTCTAGAGATCCGCCTGTTGATTTGAGGAACTTTATGGCAGAGGCTTGA
AA sequence Show only first row Show all	>Lus10034440 pacid=23175953 polypeptide=Lus10034440 locus=Lus10034440.g ID=Lus10034440.BGIv1.0 annot-version=v1.0 MQLARVSGLLGTRLFVRFMGGGPRTFPGGLNKWQWKRMHEKQAREKEKRLLDQEKQLYQARIRSQIRSKLVDGDPGDINSSSGSASGGANYNPMTPKDHV KALADRFMKEGAEDLWNEDDGPLQSPLPRPAGRSETMSREQGSRDPPVDLRNFMAEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63250			DEA(D/H)-box RNA helicase fami...		Lus10034440 [exp]	0	1
AT3G10110		MEE67	maternal effect embryo arrest ...		Lus10020223 [exp]	6.2	0.7409
					Lus10015575 [exp]	9.2	0.6721
AT5G08510			Pentatricopeptide repeat (PPR)...		Lus10030225 [exp]	9.5	0.7037
AT5G67220			FMN-linked oxidoreductases sup...		Lus10006260 [exp]	10.3	0.7369
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10011368 [exp]	12.0	0.6553
AT1G55570		SKS12	SKU5 similar 12 (.1)		Lus10010337 [exp]	12.3	0.7088
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014402 [exp]	14.2	0.7364
AT2G03380			Pentatricopeptide repeat (PPR)...		Lus10030418 [exp]	20.1	0.6836
AT2G39980			HXXXD-type acyl-transferase fa...		Lus10040222 [exp]	21.7	0.6940
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10028836 [exp]	27.7	0.6737

Compare expression of checked genes

Lus10034440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.