Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10860 349 / 9e-120 CBSX3 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) AT1G47271 180 / 3e-54 Cystathionine beta-synthase (CBS) family protein (.1) AT5G58270 185 / 5e-51 ABCB25, ATATM3, STA1 STARIK 1, ARABIDOPSIS THALIANA ABC TRANSPORTER OF THE MITOCHONDRION 3, ATP-binding cassette B25, ABC transporter of the mitochondrion 3 (.1) AT4G28630 155 / 1e-40 ABCB23, ATATM1, ATM1 ATP-binding cassette B23, ABC transporter of the mitochondrion 1 (.1) AT4G28620 144 / 1e-36 ABCB24, ATATM2, ATM2 ARABIDOPSIS THALIANA ABC TRANSPORTER OF THE MITOCHONDRION 2, ATP-binding cassette B24, ABC transporter of the mitochondrion 2 (.1) AT2G36500 52 / 8e-07 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT3G52950 51 / 1e-06 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) AT5G63490 49 / 7e-06 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G50530 48 / 1e-05 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G50640 48 / 1e-05 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019117 [exp] 405 / 6e-142 AT5G10860 347 / 2e-123 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10035014 [exp] 352 / 6e-121 AT5G10860 341 / 5e-121 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10021675 [exp] 352 / 1e-120 AT5G10860 338 / 7e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10019120 [exp] 247 / 5e-80 AT5G58270 148 / 9e-42 STARIK 1, ARABIDOPSIS THALIANA ABC TRANSPORTER OF THE MITOCHONDRION 3, ATP-binding cassette B25, ABC transporter of the mitochondrion 3 (.1) Lus10001964 [exp] 195 / 2e-59 AT1G47271 202 / 5e-66 Cystathionine beta-synthase (CBS) family protein (.1) Lus10032625 [exp] 48 / 2e-05 AT5G50530 721 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Lus10043123 [exp] 48 / 2e-05 AT5G50530 714 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Lus10002834 [exp] 45 / 0.0001 AT4G34120 260 / 2e-87 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1) Lus10025698 [exp] 45 / 0.0001 AT3G52950 728 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G161500 [exp] 354 / 1e-121 AT5G10860 343 / 8e-122 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Potri.017G000100 [exp] 338 / 2e-115 AT5G10860 339 / 2e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Potri.005G228300 [exp] 225 / 2e-71 AT1G47271 251 / 1e-85 Cystathionine beta-synthase (CBS) family protein (.1) Potri.013G160500 [exp] 207 / 6e-59 AT5G58270 1048 / 0.0 STARIK 1, ARABIDOPSIS THALIANA ABC TRANSPORTER OF THE MITOCHONDRION 3, ATP-binding cassette B25, ABC transporter of the mitochondrion 3 (.1) Potri.019G132800 [exp] 200 / 2e-56 AT5G58270 1002 / 0.0 STARIK 1, ARABIDOPSIS THALIANA ABC TRANSPORTER OF THE MITOCHONDRION 3, ATP-binding cassette B25, ABC transporter of the mitochondrion 3 (.1) Potri.002G034800 [exp] 97 / 1e-23 AT1G47271 102 / 4e-28 Cystathionine beta-synthase (CBS) family protein (.1) Potri.005G070500 [exp] 52 / 1e-06 AT3G52950 750 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Potri.012G099600 [exp] 47 / 3e-05 AT5G50530 639 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Potri.015G098100 [exp] 47 / 3e-05 AT5G50530 628 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Potri.007G098400 [exp] 47 / 4e-05 AT3G52950 728 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Lus10034441 pacid=23175897 polypeptide=Lus10034441 locus=Lus10034441.g ID=Lus10034441.BGIv1.0 annot-version=v1.0 ATGGCAGCAGCCGGTAGAGCAGCTGCAATTGCGACGTGCAAGCTCTGCAAATCAGCTTCTTTTGCCAGAAGGCTCATTCCCTGCAGCAATCAATCTTTCT CCTCCGTCTCATTCTTACCTTCTTTCCGCTCTTCTTCTTCTTCTGTTTTCTATCCTGATTATCTCTATCACTCCAAGCTAGCTCGGAGGAATATCTCTGC TTCAGTGCGAATCCCTCTCAATTCGATTCCAGCTGATTCTGCATCTTTCTCCGCCTCTCCGTTTCGATTTGAATCGCGCAATTTGAGATTGAATGGCCGA GTTTGCTACTCCAGCTCTACTGCTGCTAGTAGTAGTAATACCGCTCCAAGCAGGGATGTCAATGGCTCGCCAGTGGCTTCTCCTAAATCTCAGCAAGAAC AAGTCGCCGACACGAAAATCATCCGAACTCTGGTTTCTTACTTGTGGATGAAGGATAACTTTGAATTCCGCTTAAGGGTCATCGCTGCTCTTGGATTTCT TGTTGGGGCTAAGGTCTTGAACGTTCAAGTGCCTTTCCTTTTCAAGCTTGCGGTTGATTGGTTGACCACTGCCACTTCCAATGCCCCGGGGCTTGCTTCT TTTACTGCTTCCAATTCAACCCTCATGCTTATGTTTGCTACCCCTGCCTCTGTTCTCGTTGGATATGGAATAGCTCGCTGCACAGCAGCTGCTTTCAATG AGTTGAGAACTGCTGTATTCTCAAAGGTAGCTCTGCGCACGATTCGGTTGGTTTCCAGAAAGCTTACTCGTGAGTTTTCTCAACCTTCCATTTCCTTGAC CATGGCGTCCTTGTTTCAGATCTTCCTTCTTTCCAAGCAATACGACACAATGCAAGGCGCAGTTCAAGGTTTCTTCTCCCGGGCAGGCGTCGTCAAGGCC TCTCTGCTGCAGCACGGCCGGGTCCTGAATCCGGCTCTCCGTCCACTCCTTTTCTCCAGATCGGAGTCTGTATCGCCGGCGAGAATAGAGGAGCATGGCT TCGAGCACACAACGATCGCCGATGTCTTGACCTCCAAAGGTAAAGCTGCTGATGGCTCCTGGCTATGGTGCACCGTGGAAGACTCTGTTTACGATGCTGT CCAGTCGATGACGCAGCACAATGTTGGTGCCTTGGTGGTTGTCAAACCTGGACAGCAGAAATCAATTGCTGGTATCATCACCGAGAGAGACTACTTGCGG AAGATCATAGTGCAGGGCAGATCATCCAAGTCTACCAAGGTTGGAGATATTATGACCGAAGAGAACAAGCTTATCACAGTGACACCGGACACCAAAGTTC TGCGGGCAATGCAGCTGATGACCGATAACCGCATCAGGCACATCCCAGTCATCAACGACACAGGAATGATTGGCATGGTGTCCATCGGCGATGTTGTTCG TGCTGTGGTGGGAGAGCACCGGCAGGAGTTGGACCGGCTCAACGCCTACATACAAGGAGGTTATTAG
AA sequence Show only first row Show all	>Lus10034441 pacid=23175897 polypeptide=Lus10034441 locus=Lus10034441.g ID=Lus10034441.BGIv1.0 annot-version=v1.0 MAAAGRAAAIATCKLCKSASFARRLIPCSNQSFSSVSFLPSFRSSSSSVFYPDYLYHSKLARRNISASVRIPLNSIPADSASFSASPFRFESRNLRLNGR VCYSSSTAASSSNTAPSRDVNGSPVASPKSQQEQVADTKIIRTLVSYLWMKDNFEFRLRVIAALGFLVGAKVLNVQVPFLFKLAVDWLTTATSNAPGLAS FTASNSTLMLMFATPASVLVGYGIARCTAAAFNELRTAVFSKVALRTIRLVSRKLTREFSQPSISLTMASLFQIFLLSKQYDTMQGAVQGFFSRAGVVKA SLLQHGRVLNPALRPLLFSRSESVSPARIEEHGFEHTTIADVLTSKGKAADGSWLWCTVEDSVYDAVQSMTQHNVGALVVVKPGQQKSIAGIITERDYLR KIIVQGRSSKSTKVGDIMTEENKLITVTPDTKVLRAMQLMTDNRIRHIPVINDTGMIGMVSIGDVVRAVVGEHRQELDRLNAYIQGGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10860		CBSX3	CBS domain containing protein ...		Lus10034441 [exp]	0	1
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10006842 [exp]	1.7	0.8559
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10037587 [exp]	2.4	0.8408
AT4G38810			Calcium-binding EF-hand family...		Lus10007567 [exp]	3.5	0.8402
AT2G22420			Peroxidase superfamily protein...		Lus10025737 [exp]	6.3	0.7849
AT4G01130			GDSL-like Lipase/Acylhydrolase...		Lus10012644 [exp]	9.4	0.7540
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10027627 [exp]	9.9	0.7611
AT4G38810			Calcium-binding EF-hand family...		Lus10012178 [exp]	11.2	0.7701
AT3G57170			N-acetylglucosaminyl transfera...		Lus10003248 [exp]	14.7	0.7691
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Lus10003623 [exp]	15.0	0.7676
AT3G05165			Major facilitator superfamily ...		Lus10018956 [exp]	19.5	0.7154

Compare expression of checked genes

Lus10034441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.