Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08620 286 / 2e-96 RNA-binding KH domain-containing protein (.1) AT2G38610 286 / 3e-96 RNA-binding KH domain-containing protein (.1.2) AT4G26480 234 / 1e-75 RNA-binding KH domain-containing protein (.1) AT5G56140 234 / 1e-75 RNA-binding KH domain-containing protein (.1) AT1G09660 204 / 3e-64 RNA-binding KH domain-containing protein (.1.2) AT5G51300 103 / 4e-24 splicing factor-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019116 [exp] 395 / 1e-139 AT2G38610 275 / 7e-93 RNA-binding KH domain-containing protein (.1.2) Lus10021676 [exp] 360 / 6e-125 AT2G38610 314 / 1e-107 RNA-binding KH domain-containing protein (.1.2) Lus10035015 [exp] 359 / 1e-124 AT2G38610 315 / 5e-108 RNA-binding KH domain-containing protein (.1.2) Lus10035608 [exp] 298 / 5e-101 AT2G38610 494 / 6e-179 RNA-binding KH domain-containing protein (.1.2) Lus10003241 [exp] 298 / 6e-101 AT2G38610 488 / 1e-176 RNA-binding KH domain-containing protein (.1.2) Lus10037344 [exp] 233 / 2e-75 AT1G09660 400 / 1e-141 RNA-binding KH domain-containing protein (.1.2) Lus10035768 [exp] 231 / 1e-74 AT1G09660 399 / 7e-141 RNA-binding KH domain-containing protein (.1.2) Lus10038932 [exp] 100 / 4e-23 AT5G51300 897 / 0.0 splicing factor-related (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G159800 [exp] 305 / 7e-104 AT2G38610 408 / 7e-145 RNA-binding KH domain-containing protein (.1.2) Potri.019G132100 [exp] 303 / 5e-103 AT2G38610 381 / 3e-134 RNA-binding KH domain-containing protein (.1.2) Potri.016G140800 [exp] 293 / 3e-99 AT2G38610 456 / 7e-164 RNA-binding KH domain-containing protein (.1.2) Potri.006G111400 [exp] 293 / 4e-99 AT2G38610 467 / 4e-168 RNA-binding KH domain-containing protein (.1.2) Potri.001G471000 [exp] 233 / 2e-75 AT5G56140 425 / 9e-151 RNA-binding KH domain-containing protein (.1) Potri.003G005500 [exp] 231 / 2e-74 AT1G09660 335 / 8e-116 RNA-binding KH domain-containing protein (.1.2) Potri.004G225900 [exp] 228 / 2e-73 AT1G09660 334 / 2e-115 RNA-binding KH domain-containing protein (.1.2) Potri.011G168000 [exp] 228 / 3e-73 AT5G56140 427 / 8e-152 RNA-binding KH domain-containing protein (.1) Potri.003G107200 [exp] 100 / 3e-23 AT5G51300 830 / 0.0 splicing factor-related (.1.2.3) Potri.001G126400 [exp] 100 / 4e-23 AT5G51300 790 / 0.0 splicing factor-related (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10034443 pacid=23176066 polypeptide=Lus10034443 locus=Lus10034443.g ID=Lus10034443.BGIv1.0 annot-version=v1.0 ATGTCTGGACTGTACGCTCACAATTTCTCGCCTTCTACTGCAACTCCGCAGCCATCTGCCGCCGTAGCAGCCGCAGCAGCCTCCCCTCAGCATCATCCTC AAAATCTTCATCATCATCGACAACAACAGCAGCATCACCATCTTCATAACCTTGAGAATATCGGGAGTGGTCACCAGCTGCAGCAGCAGCAGCGCCAGTA TCTGGTGGAGCTATTGGAAGAACATGACAAAATCGGGCCGTTCATGGAGGTTCTTCCTATCTCCACTCGCCTTCTCAATCAAGAGATATTAAGGGTTTCT GGAATTGTCCCCAGCCAGCCACAAGGTTTCAGCCCCTTTGGATCACTTCATCAACGCCCATCCCTGAGTCCCCGGCGGAGTGAAGATCCATCCTGGAATT CCCCCCTCCCTCCCCAGCGATTCGGAACAGAGGGGGTGAACATGGATTGGCAAGCTCCACCAACAAGCCCAAGTTCTTATGCTGTGAAGAAGATCTTGCG TTTGGATATTCCCATTGATAGCTTCCCAAATTTCAATTTTGTAGGTCGGCTCCTTGGACCAAGAGGGAACTCCCTTAAACGTGTTGAAGCTACGACTGGC TGCCGTGTCTTCATTAGAGGGAAGGGTTCGATAAAGGATACCGAGAAGGAGGACACACTGAGGGGAAGACCAGGGTATGAGCATTTGAGCGAACCTCTTC ACATTTTGATCGAGGCTGAATTACCAGTTAACATTGTGGACATGCGATTAAGACAAGCCAAGGAGATAATTGAAGAAGTGCTTAGACCTGTGGACGAGGC GCAGGATCTGTATAAGAGGCAACAACTGAGGGAACTAGCGTTGCTAAACTCGAGCTACAGAGAAGAAAGCCCTGGACCAAGTGCAAGTGGTAGCGTCTCT CCTTTCTCGTCAAATATTATTGGAATGAAGCGTGCTAAAATGGGTCAATAG
AA sequence Show only first row Show all	>Lus10034443 pacid=23176066 polypeptide=Lus10034443 locus=Lus10034443.g ID=Lus10034443.BGIv1.0 annot-version=v1.0 MSGLYAHNFSPSTATPQPSAAVAAAAASPQHHPQNLHHHRQQQQHHHLHNLENIGSGHQLQQQQRQYLVELLEEHDKIGPFMEVLPISTRLLNQEILRVS GIVPSQPQGFSPFGSLHQRPSLSPRRSEDPSWNSPLPPQRFGTEGVNMDWQAPPTSPSSYAVKKILRLDIPIDSFPNFNFVGRLLGPRGNSLKRVEATTG CRVFIRGKGSIKDTEKEDTLRGRPGYEHLSEPLHILIEAELPVNIVDMRLRQAKEIIEEVLRPVDEAQDLYKRQQLRELALLNSSYREESPGPSASGSVS PFSSNIIGMKRAKMGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38610			RNA-binding KH domain-containi...		Lus10034443 [exp]	0	1
AT1G06400		ARA2, AtRABA1a,...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10029789 [exp]	1.0	0.9111
AT3G59350			Protein kinase superfamily pro...		Lus10026706 [exp]	2.4	0.9038
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10035934 [exp]	3.5	0.9027
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10035481 [exp]	6.5	0.8855
AT1G55960			Polyketide cyclase/dehydrase a...		Lus10033334 [exp]	7.3	0.8899
AT4G20300			Protein of unknown function (D...		Lus10038379 [exp]	7.7	0.8801
AT2G16530			3-oxo-5-alpha-steroid 4-dehydr...		Lus10042055 [exp]	7.7	0.8997
AT1G68370		ARG1	ALTERED RESPONSE TO GRAVITY 1,...		Lus10034344 [exp]	7.9	0.8802
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10003808 [exp]	8.0	0.9022
AT4G16070			Mono-/di-acylglycerol lipase, ...		Lus10016834 [exp]	8.7	0.8641

Compare expression of checked genes

Lus10034443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.