Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30530 227 / 1e-70 unknown protein AT5G01970 214 / 9e-66 unknown protein AT1G30050 191 / 1e-56 unknown protein AT4G02800 107 / 6e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019115 [exp] 526 / 0 AT2G30530 267 / 5e-86 unknown protein Lus10035153 [exp] 335 / 3e-111 AT5G01970 264 / 8e-85 unknown protein Lus10031947 [exp] 311 / 2e-103 AT5G01970 263 / 1e-85 unknown protein Lus10035609 [exp] 138 / 5e-37 AT1G30050 187 / 5e-56 unknown protein Lus10003240 [exp] 123 / 5e-30 AT5G01990 610 / 0.0 Auxin efflux carrier family protein (.1) Lus10022037 [exp] 107 / 1e-25 AT4G02800 276 / 1e-91 unknown protein Lus10014668 [exp] 99 / 7e-23 AT4G02800 262 / 1e-85 unknown protein Lus10000658 [exp] 99 / 1e-22 AT4G02800 266 / 1e-87 unknown protein Lus10042577 [exp] 0 / 1 AT4G02800 109 / 1e-28 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G132300 [exp] 317 / 1e-103 AT2G30530 253 / 9e-80 unknown protein Potri.013G160100 [exp] 289 / 4e-93 AT2G30530 266 / 8e-85 unknown protein Potri.006G111900 [exp] 223 / 2e-67 AT5G01970 352 / 2e-118 unknown protein Potri.016G141300 [exp] 220 / 1e-66 AT5G01970 353 / 2e-119 unknown protein Potri.002G053100 [exp] 102 / 5e-24 AT4G02800 276 / 3e-91 unknown protein Potri.005G209400 [exp] 99 / 8e-23 AT4G02800 291 / 3e-97 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034444 pacid=23176024 polypeptide=Lus10034444 locus=Lus10034444.g ID=Lus10034444.BGIv1.0 annot-version=v1.0 ATGGCGTACAGACGACGAGGTCAGCCATCCTCTTCTTCTTCTTTCTATTACTCCTACGACAATCACAGAAACGGAAACGAAGAAGAAGAAGAAGAAGCAG CACCGCCGCAAGATTCCACTGAACTTGCCGCCAAAGCCATCCGAGCATCCTCCGCCGCCCAAACCCTCCGTGACTCCTCCCTTTCCTCAGCTTACTATGC CTTCCCTCCCTCTCCTTCTGCTTCTGCGGCTTCTGCTTCTTCCAAGGCGCAGGATACTCCCCACTCTTATACCTCGATGAACAGCTTCAAACAGTCCAAT CCTGATCCGAAGCCAGGTGGGTTTTGGGGAACTCTTGCTAGGAAGGCTAAATCCTTCCTCGACGATGACGATTATGACAATGAAGATCAACGCCATCATC ACCAGCAGTTCCCGCAGCATCCGTACCGACAAGAAAGGCCTCAGCAGCAAACTCACTCTCCTCCTCCGAATCCGCAATCGCCGTCTGATCCCTCCCCTAC CTCTTTACCGAAGAATGATGCTCGCCCTGTTCCCCTTAATGAAAGCAGTAGAAAGAAAGAATTGCACAAGGGGCTCAACGCTATTTCTTCTTCACTTAAC TATATTGGCAATGCTGTTGAGGAGGGCCTCACGAAAGTGGAGAACCGAACAGCCAACATTATCCAGGGAACACGTAAGCATATCAGGAAAAAACCCGGTG GTACTACTGCACCGAGCCAGACAACCAATCAAAGTACTGCAAGGCAACAACCTCAAGTCCCGCCACAGGTGCAGACCCAGACGCGATCTGATCTGGAGCT TCAACTGAAGACATCTCGCGACGTTGCGATGGCAATGGCTGCTAAAGCAAAATTACTGCTTCGGGAGCTGAAATCTGTAAAAGCTGATTTGACTTTTTCC AAGGAAAGGTGTGCTCAGCTGGAAGAGGAAAATAAGGTCCTCAGGGAGAACCGTGAAAGAGGAGGTAACCTGGAAGACGATGACATGATTCGTCTTCAAC TGGAGACTCTGCTAGCAGAGAAGGCACGTTTGGCACATGAGAACTCGGTATTTGCAAGAGAAAACCGATTCTTGAGGGAAGTAGTGGAGTATCACCAGCT TACAATGCAGGATGTAGTGTACTTGGACGAATGTACTGAAGAAGTGAAAGAAGTATATCCAATTAAGGTAGTGACAAGCACCACCACCGCCGCCAATGGG CTCACCGAGACGTTGGTGCACCCTGTGCCCCCACCCGGACTGGGGCTCGAAATAGACAAAGCTTCCCGACACCAAATTCATAATATGCCCCCCTCTTGA
AA sequence Show only first row Show all	>Lus10034444 pacid=23176024 polypeptide=Lus10034444 locus=Lus10034444.g ID=Lus10034444.BGIv1.0 annot-version=v1.0 MAYRRRGQPSSSSSFYYSYDNHRNGNEEEEEEAAPPQDSTELAAKAIRASSAAQTLRDSSLSSAYYAFPPSPSASAASASSKAQDTPHSYTSMNSFKQSN PDPKPGGFWGTLARKAKSFLDDDDYDNEDQRHHHQQFPQHPYRQERPQQQTHSPPPNPQSPSDPSPTSLPKNDARPVPLNESSRKKELHKGLNAISSSLN YIGNAVEEGLTKVENRTANIIQGTRKHIRKKPGGTTAPSQTTNQSTARQQPQVPPQVQTQTRSDLELQLKTSRDVAMAMAAKAKLLLRELKSVKADLTFS KERCAQLEEENKVLRENRERGGNLEDDDMIRLQLETLLAEKARLAHENSVFARENRFLREVVEYHQLTMQDVVYLDECTEEVKEVYPIKVVTSTTTAANG LTETLVHPVPPPGLGLEIDKASRHQIHNMPPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30530			unknown protein		Lus10034444 [exp]	0	1
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009477 [exp]	1.0	0.8740
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10043009 [exp]	2.0	0.8132
AT3G56250			unknown protein		Lus10030552 [exp]	2.4	0.7730
AT4G26240			unknown protein		Lus10012919 [exp]	3.0	0.8089
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Lus10015885 [exp]	4.9	0.7684
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10002832 [exp]	6.3	0.7331
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10023691 [exp]	6.8	0.7224
AT3G04500			RNA-binding (RRM/RBD/RNP motif...		Lus10000555 [exp]	9.9	0.7542
AT3G12760			unknown protein		Lus10009599 [exp]	15.2	0.7736
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10042404 [exp]	16.5	0.7517

Compare expression of checked genes

Lus10034444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.