Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06840 1192 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G01950 925 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G37450 784 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G53590 622 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G79620 465 / 4e-148 Leucine-rich repeat protein kinase family protein (.1) AT5G49770 381 / 9e-117 Leucine-rich repeat protein kinase family protein (.1) AT5G49760 379 / 6e-116 Leucine-rich repeat protein kinase family protein (.1) AT5G49780 288 / 3e-83 Leucine-rich repeat protein kinase family protein (.1) AT3G24550 266 / 3e-77 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT3G20530 255 / 3e-76 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019114 [exp] 1715 / 0 AT1G06840 1288 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035605 [exp] 956 / 0 AT5G01950 1126 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003244 [exp] 897 / 0 AT5G01950 1039 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004061 [exp] 728 / 0 AT5G01950 766 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002278 [exp] 609 / 0 AT5G37450 722 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10012159 [exp] 446 / 2e-140 AT5G49760 1058 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007587 [exp] 367 / 8e-112 AT5G49760 956 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021003 [exp] 316 / 2e-97 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023848 [exp] 286 / 3e-87 AT1G79620 431 / 5e-143 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G159200 [exp] 1274 / 0 AT1G06840 1040 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131800 [exp] 1268 / 0 AT1G06840 1092 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G159500 [exp] 1264 / 0 AT1G06840 1102 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G111100 [exp] 1035 / 0 AT5G01950 1052 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G140300 [exp] 1020 / 0 AT5G01950 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G140200 [exp] 999 / 0 AT5G01950 1018 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G140101 [exp] 983 / 0 AT1G06840 1001 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G144100 [exp] 449 / 7e-142 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231700 [exp] 446 / 6e-141 AT5G49760 1031 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G114400 [exp] 432 / 8e-136 AT1G79620 1295 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10034445 pacid=23175959 polypeptide=Lus10034445 locus=Lus10034445.g ID=Lus10034445.BGIv1.0 annot-version=v1.0 ATGTGTTCTGTATGGACATCGTCTCTAGTCGGAGTTCTGTGGCTTACGTGCTTCTATTGTTCTGCACCTTTTGCTGCAGCGCAGTCCATTACTGATCCTG TTGAAGTCAAGGCATTGGGGGACGTTCACCGAAGTTTGATTGATATCAATAAGAATTTGAGCAACTGGAATAGAGGGGATCCATGCACTTCCAACTGGAC TGGGGTTCTGTGTTTCAATTCACCTATGGATGACGGCTATCTACATGTTAGAGAATTGCAACTGATCGACATGAATCTTACAGGAACTTTATCGCCGTCC CTTGGGGAATTTTCATATATGAGGATCTTGGATGTTATGTGGAACAACATAAGTGGAAGCATCCCGAAGGAGATAGGCAACATTAAGTCTCTGGAGCTAT TGCTCCTTAATGGAAACAATCTAACAGGTTCTCTTCCGGAAGAGCTTGGCTATCTTCCGAACTTGGACAGAATACAGATTGACCAGAATCATATATCAGG ACCAATACCCAAATCATTTGCATTCCTGAACAAGACCCAGCACTTTCACATGAACAACAATTCAATAAGCGGGCAAATTCCTCCAGAGCTTTCCAGATTA CCAAATCTACTTCATTTCCTTCTGGACAACAACGACTTAACTGGATACCTTCCTCCTGAGTTTTCTGAATTGCCAAGAATACTTATTCTGCAACTTGACA ATAACAACTTCCAGGGGACCTCGATTCCACCGTCTTATAGCAACATGACTAAATTGTTGAAGTTGAGTTTGAGAAATTGTAGCTTGGAAGGACCAATACC TGATCTGAGCCGTATCCCAGACCTTGGATATTTGGATCTAAGTTCAAACGAGCTGAATGGAACCATACCTTCCAATAAACTTTCAGACAATATCACAACC ATAGACCTGTCCAACAACAATCTTGTCGGAACTGTTCCACCCAGCTTCTCAGGTCTTCCTCTTCTTCAGATATTGTCACTTGCAAATAACTCGCTGAACG GCTCTATTCCATCGAACATATGGCAGAGTAGGAGTAACAGTGGAAGCAGAGGACTTGTTTTGGATTTTGAAAACAACAGCTTCTCAGATATCGTTGGTGC TACTACTCTCCCTCCAAATGTGACACTCTGGAAAGCAGAATTTAAGGATGCTCAGTTGCTCCGGACTATTATTAACAAGTTTCTTGTGAATGATTTCAGG CTTCAAGGGAACCCTGCTTGCTCAAATTCTAGCCTAGTCAAGTTTTGTGGAGCTCCTGTTATCGATTTAAACAAATCGAATTCAACAAACTCTACTTCTG TCTGCCCAATTCAAGCATGCCCCGCACCATTTGAATATTCCCCAACATCGTCTACATCATGTTTCTGTGCTGCTCCTCTGATAATTGGATACCGATTGAA AAGTCCTGGATTCTTTGATTTCCGACCCTATAAAGATGCATTTGAGTGGTACTTGACTGACGGACTCAGAGTACAACTTTCTCAGCTAGACCTCAATCAA TTTTCCTGGGAAAAAGGACCACGAATCAAAATGCACTTGAAGATCTTCCCTGTATATAATCCCAACTCCAATACCTCTCATCTCTTCAATAATAGTGAGG CTCGACGCATCGTAAGCATGTTTACGGGTTGGAACATTCCTGACAGTGAGATATTTGGGCCTTACGAACTTCTCTACCTCACTCTGCTGGACCCTTACAG AAATGTGATTGATGGAGGCTCTGATAAATCTGGGATAAGTAAGGGTGCTGTAGCGGGGATAGTCTTGGGGGCTATTGCAGGTGCAGTGACATTATCTGCC ATTGTCACACTTCTTATAGTCAGAACACAAATGCGGAAGTATCGTGTAGTTTCAAAAAGGCGCCATCTATCTAAAGCCTCCATCCGGATTGAGGGGGTCA AGGGTTTCACTTATGCTGAAATGGCTTTGGCGACAAATAATTTCAGTAATTCTGCCCAAGTAGGTCAAGGAGGGTATGGAAAAGTGTACAGAGGTGTTAT GGCTGAAGGCACTCTTGTAGCCATCAAACGTGCTCAAGAAGGTTCTTTACAAGGGGAGAAGGAGTTCTTGACTGAAATACAATTGCTCTCAAGACTTCAT CATAGAAACCTAGTGTCTCTGACTGGGTACTGTGATGAAGAAGGTGAACAGATGTTGGTTTACGAGTTTATGCCGAATGGCACTTTAAGAGATCATCTCT CTGGCAAGACCAAAGAACCATTGAGTTTCGCAACTCGAGTAAGAGTAGCTTTGGGGTCAGCTAAGGGAATTCTTTATCTTCACACAGAAGCAGATCCCCC AATTTTCCACCGAGATATCAAGGCAAGCAACATATTGTTGGACAACAGGTTTAATGCAAAGGTTGCAGATTTCGGGCTTTCCCGACTTGCACCAGTTCCA GATCTTGAAGGTGAAGTGGCGGCTCATGTATCCACAGTTGTAAAGGGTACACCGGGTTACCTGGATCCGGAGTACTTCCTAACGCATAAATTGACGGACA AAAGTGACGTTTACAGCCTCGGAGTCGTGTTCCTTGAACTGTTGACCGGTATGCAACCGATCTCTCACGGGAAGAACATCGTTCGCGAGGTAAATATGGC ATACCAGTCTGGTATGATATTCTCAGTGATCGATGATAAAATGGGATCATACCCTTCGGACTGCGTGGAGAAGTTTCTGACATTGGCACTGAAATGCTGC CAAGATGAGACGGATTCGAGACCGTCGATGGCTGAAGTGGTACGAGAACTGGAGACCATATGGTCTTTCCTGCCGGAATCTGAAACCAAAACTTCAGAAT CAGTTACCACTAAGGATACAGATTCGAAAATGGCCGACGGGAGTACGCCGCCTTCGTCAGCTTCCTCCTCACTCAAGAATCCTTACGTGTCATCCGATGT GTCAGGCAGCAATCTTGTTAGCGGAGTGGTTCCCACCATTTCACCCAGGTGA
AA sequence Show only first row Show all	>Lus10034445 pacid=23175959 polypeptide=Lus10034445 locus=Lus10034445.g ID=Lus10034445.BGIv1.0 annot-version=v1.0 MCSVWTSSLVGVLWLTCFYCSAPFAAAQSITDPVEVKALGDVHRSLIDINKNLSNWNRGDPCTSNWTGVLCFNSPMDDGYLHVRELQLIDMNLTGTLSPS LGEFSYMRILDVMWNNISGSIPKEIGNIKSLELLLLNGNNLTGSLPEELGYLPNLDRIQIDQNHISGPIPKSFAFLNKTQHFHMNNNSISGQIPPELSRL PNLLHFLLDNNDLTGYLPPEFSELPRILILQLDNNNFQGTSIPPSYSNMTKLLKLSLRNCSLEGPIPDLSRIPDLGYLDLSSNELNGTIPSNKLSDNITT IDLSNNNLVGTVPPSFSGLPLLQILSLANNSLNGSIPSNIWQSRSNSGSRGLVLDFENNSFSDIVGATTLPPNVTLWKAEFKDAQLLRTIINKFLVNDFR LQGNPACSNSSLVKFCGAPVIDLNKSNSTNSTSVCPIQACPAPFEYSPTSSTSCFCAAPLIIGYRLKSPGFFDFRPYKDAFEWYLTDGLRVQLSQLDLNQ FSWEKGPRIKMHLKIFPVYNPNSNTSHLFNNSEARRIVSMFTGWNIPDSEIFGPYELLYLTLLDPYRNVIDGGSDKSGISKGAVAGIVLGAIAGAVTLSA IVTLLIVRTQMRKYRVVSKRRHLSKASIRIEGVKGFTYAEMALATNNFSNSAQVGQGGYGKVYRGVMAEGTLVAIKRAQEGSLQGEKEFLTEIQLLSRLH HRNLVSLTGYCDEEGEQMLVYEFMPNGTLRDHLSGKTKEPLSFATRVRVALGSAKGILYLHTEADPPIFHRDIKASNILLDNRFNAKVADFGLSRLAPVP DLEGEVAAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNMAYQSGMIFSVIDDKMGSYPSDCVEKFLTLALKCC QDETDSRPSMAEVVRELETIWSFLPESETKTSESVTTKDTDSKMADGSTPPSSASSSLKNPYVSSDVSGSNLVSGVVPTISPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06840			Leucine-rich repeat protein ki...		Lus10034445 [exp]	0	1
AT5G57190		PSD2	phosphatidylserine decarboxyla...		Lus10035633 [exp]	3.0	0.9469
AT2G36950			Heavy metal transport/detoxifi...		Lus10022617 [exp]	4.9	0.9570
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10038940 [exp]	5.1	0.9517
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10007631 [exp]	5.5	0.9434
AT3G26020			Protein phosphatase 2A regulat...		Lus10037057 [exp]	7.3	0.9341
AT5G55560			Protein kinase superfamily pro...		Lus10001165 [exp]	9.8	0.9246
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10020480 [exp]	10.9	0.9360
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033365 [exp]	12.2	0.9466
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10033881 [exp]	12.4	0.9335
AT5G55060			unknown protein		Lus10040061 [exp]	16.2	0.9376

Compare expression of checked genes

Lus10034445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.