Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58300 789 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT3G08680 644 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 608 / 0 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT4G23740 538 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 436 / 3e-145 RLK902 receptor-like kinase 902 (.1) AT3G02880 419 / 1e-138 Leucine-rich repeat protein kinase family protein (.1) AT5G16590 413 / 2e-136 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT5G24100 403 / 9e-133 Leucine-rich repeat protein kinase family protein (.1) AT2G26730 393 / 3e-128 Leucine-rich repeat protein kinase family protein (.1) AT2G36570 391 / 2e-127 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019113 [exp] 1146 / 0 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 954 / 0 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 944 / 0 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017756 [exp] 580 / 0 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032351 [exp] 568 / 0 AT4G23740 802 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10029005 [exp] 542 / 0 AT5G58300 612 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10038828 [exp] 499 / 8e-170 AT4G23740 613 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033065 [exp] 488 / 7e-166 AT2G26730 768 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10039321 [exp] 488 / 1e-165 AT4G23740 649 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G131500 [exp] 885 / 0 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 885 / 0 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 748 / 0 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 738 / 0 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 607 / 0 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G095200 [exp] 573 / 0 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G136100 [exp] 561 / 0 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G033200 [exp] 552 / 0 AT4G23740 656 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G023500 [exp] 539 / 0 AT4G23740 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G130600 [exp] 462 / 2e-155 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10034446 pacid=23176002 polypeptide=Lus10034446 locus=Lus10034446.g ID=Lus10034446.BGIv1.0 annot-version=v1.0 ATGGTAACAGGGTCCCCGGAGCATTACATCTTAATGAATCTACGCCAAGTTGATTCGTTGAGGAGGCTCATTCGGGTTTCGGTCCTGTGTTGCTTCTTTG TTCTAGTCACCCTGCAATCTCTAGCCGTTTCAGACCTCAATTCAGATAGGCAAGCTCTTCTAGATTTTGCTGCTTTTGTACCACATTATCGTTTTCTTAA CTGGAATCCCGCTGCTTCAACATGTCACACTTGGTTGGGTGTCACTTGCAACTCAGACGGTTCTCGTGTGGTTGCACTCCGACTCCCCGGGGTCGGACTT GTAGGCTCTATACCTCCTAACACTCTAGGTAAACTCGATGCCTTGAAGGTTCTCAGCCTTAGATCGAATGTCCTTAGTGGCGATCTTCCGACCGATGTTG CTTCTCTTCCCTCGCTTCATTCCTTATACTTGCAGCACAATAACTTGAATGGTACCATTCCTGCCACATTTTCCTCTCAACTCAATGTATTAGATCTCTC GTTCAATAACTTCACAGGCAAGATTCCCCGAATGCTGTCGAATTTAACTCAACTCATTAGCTTAGACCTCCAAAATAATTCTCTCTTTGGAGCCATACCG GACCTTAATCGTACCTTGCTCAAACATTTGGATTTGAGTAACAACCATTTGAACGGTTCGATTCCTTTGTCTCTTAAAACGTTCCCCAAATCATCCTTTG CTGGAAACTCTCTCTTATGTGGTCTGCCACTTAATCCCTGTGATGTCATTCCCCCTCGGTCTCCATCTCCACCGCCTCCACCAGCAGTTCGTCACAAGAA AGGCACAAGAGTGAGGCTTTCAACAGGGGTAATCATTGCCATTGCAGTTGGAGGATCTGCAGTGGCTTTTCTCATAGCATTGATTATTCTATGCTGCTGT TTGAAGAAAAACGACAGTGACGGCAGTAGTATTGCGTCGAAGGGGAAGGCTGTCGATAAACCGAAAGAGGAATTTGGGAGTGGAGTGCAAGCAGCTGAGA AGAATAAGCTTGTGTTCTTTGAAGGTTGCTCCTATAATTTCGATCTTGAGGATCTATTAAGGGCTTCAGCGGAAGTGCTGGGGAAAGGTAGTTATGGGAC TGCTTATAAGGCTGTATTGGAGGAATCAATAACAGTTGTAGTGAAAAGGTTGAAAGAAGTTGTGGTAGGGAAAAGAGATTTTGAACAGCAGATGGAGATT GTAGGGAGAGTTGGTCAGCATCCAAATGTTGTGCCACTCCGTGCTTATTATTACTCCAAGGATGAGAAGCTTCTCGTGTTTGACTATGTTCCGACTGGCA GCTTAAACACGCTTTTGCATGGAAACAGGGGAGTTGGGAGAACTCCCCTTGATTGGGACAGCAGGATAAAGATAGCAGTTGGTATAGCAAAGGGAGTTGC GCACCTGCATTCAGCAGGCGGTCCGAAGTTCACTCACGGCAACATCAAGTCCTCAAACGTTCTAATGACTGCAGATAACGAAGGCTCCATTTCCGATTTC GGGATGACACCTCTCATGAACGTCCCTCCCACGACTCCCTCGCGAGGCGTGGGCTACCGTGCTCCCGAAGTGATCGAAACACGCAAGCACAGCCACAAAT CAGACGTGTACAGCTTCGGAGTGCTGATACTCGAAATGCTGACAGGGAAAGTGCCGATGCAGTCTCCTGGAAGAGGGGACGATATGGTGGACCTTCCAAG ATGGGTGCAGTCGGTGGTGAGGGAAGAATGGACGGCCGAGGTTTTCGACGTAGAGCTGATGAAGGACCATAATGTGGAGGAGGAAATGGTGCAGATGCTG CAGATAGGGATGGCCTGCGTCGCCAAAGTACCGGACATGAGGCCAAACATGGTGGAAGTTGTTCGAATGTTGGAGGAAATCCGGCAATCAGACTCGGAGA ACCGGCCTTCTTCAGAAGATAACAAATCCAATGTGCAGACTCCTTGA
AA sequence Show only first row Show all	>Lus10034446 pacid=23176002 polypeptide=Lus10034446 locus=Lus10034446.g ID=Lus10034446.BGIv1.0 annot-version=v1.0 MVTGSPEHYILMNLRQVDSLRRLIRVSVLCCFFVLVTLQSLAVSDLNSDRQALLDFAAFVPHYRFLNWNPAASTCHTWLGVTCNSDGSRVVALRLPGVGL VGSIPPNTLGKLDALKVLSLRSNVLSGDLPTDVASLPSLHSLYLQHNNLNGTIPATFSSQLNVLDLSFNNFTGKIPRMLSNLTQLISLDLQNNSLFGAIP DLNRTLLKHLDLSNNHLNGSIPLSLKTFPKSSFAGNSLLCGLPLNPCDVIPPRSPSPPPPPAVRHKKGTRVRLSTGVIIAIAVGGSAVAFLIALIILCCC LKKNDSDGSSIASKGKAVDKPKEEFGSGVQAAEKNKLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAVLEESITVVVKRLKEVVVGKRDFEQQMEI VGRVGQHPNVVPLRAYYYSKDEKLLVFDYVPTGSLNTLLHGNRGVGRTPLDWDSRIKIAVGIAKGVAHLHSAGGPKFTHGNIKSSNVLMTADNEGSISDF GMTPLMNVPPTTPSRGVGYRAPEVIETRKHSHKSDVYSFGVLILEMLTGKVPMQSPGRGDDMVDLPRWVQSVVREEWTAEVFDVELMKDHNVEEEMVQML QIGMACVAKVPDMRPNMVEVVRMLEEIRQSDSENRPSSEDNKSNVQTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58300			Leucine-rich repeat protein ki...		Lus10034446 [exp]	0	1
AT1G06230		GTE4	global transcription factor gr...		Lus10007096 [exp]	2.0	0.7566
AT3G06890			unknown protein		Lus10006514 [exp]	11.5	0.7218
AT1G10470		IBC7, ATRR1, AR...	maternal effect embryo arrest ...		Lus10030664 [exp]	12.4	0.7344
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10001370 [exp]	16.4	0.7521
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10017758 [exp]	19.5	0.6187
AT2G35470			unknown protein		Lus10035375 [exp]	20.2	0.6816
AT1G28580			GDSL-like Lipase/Acylhydrolase...		Lus10019947 [exp]	23.0	0.6828
AT2G29390		ATSMO2-2, SMO2-...	Arabidopsis thaliana sterol 4-...		Lus10040739 [exp]	30.3	0.7276
AT4G33945			ARM repeat superfamily protein...		Lus10027923 [exp]	30.7	0.7265
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Lus10039691 [exp]	51.8	0.6244

Compare expression of checked genes

Lus10034446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.