Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49350 41 / 9e-05 Glycine-rich protein family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019112 [exp] 230 / 5e-79 ND 40 / 2e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G158300 [exp] 104 / 4e-29 AT5G49350 44 / 1e-05 Glycine-rich protein family (.1.2) Potri.005G019200 [exp] 41 / 5e-05 AT1G56320 130 / 4e-39 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034447 pacid=23175892 polypeptide=Lus10034447 locus=Lus10034447.g ID=Lus10034447.BGIv1.0 annot-version=v1.0 ATGGCATTAATCAACAGCAGCAGCTTCCTCTGCATCTCCGCTGGTGTTTTCTTGCTCCTACTTCTCCATTCAAATGCCAGTGCTGAAAACCCGTTGAAGA ACGTGAACCTAAGCCCCTTCCGGCAGTGGAGAAGCGCATACGACTGCATGCAAAATTTTACAGCTAGCTGCACGGGGAAGGACGTGCTGACGCTGGCAGG AGTGGTGGACGTGAACCAGACAGAGGTAGCAGATTACTGCAAGGAAGGAGGTTGCTGGAGGCACACCATGGATGTCCTCTACTGCATCTCTATGGTGAAG AGGGACTTCTGGTTCGCTAACAAGGCCACCGTCCACGCCTTGTCCGTTGCTATCACCAATGGCTGCCAATCCAACACTGCTTTCACTACTGCAAACTACA CCCCTACTGCCACTGCTTGA
AA sequence Show only first row Show all	>Lus10034447 pacid=23175892 polypeptide=Lus10034447 locus=Lus10034447.g ID=Lus10034447.BGIv1.0 annot-version=v1.0 MALINSSSFLCISAGVFLLLLLHSNASAENPLKNVNLSPFRQWRSAYDCMQNFTASCTGKDVLTLAGVVDVNQTEVADYCKEGGCWRHTMDVLYCISMVK RDFWFANKATVHALSVAITNGCQSNTAFTTANYTPTATA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49350			Glycine-rich protein family (....		Lus10034447 [exp]	0	1
AT4G17905		ATL4H	RING/U-box superfamily protein...		Lus10025338 [exp]	2.8	0.7532
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10040322 [exp]	8.9	0.6880
AT2G16910	bHLH	AMS, bHLH021	ABORTED MICROSPORES, basic hel...		Lus10042395 [exp]	9.6	0.7005
					Lus10032314 [exp]	15.9	0.6860
					Lus10027667 [exp]	20.1	0.6738
AT1G17810		BETA-TIP	beta-tonoplast intrinsic prote...		Lus10040652 [exp]	20.2	0.6882
AT1G07260		UGT71C3	UDP-glucosyl transferase 71C3 ...		Lus10010474 [exp]	20.5	0.6488
AT1G17930			Aminotransferase-like, plant m...		Lus10001981 [exp]	21.2	0.6738
					Lus10015682 [exp]	22.2	0.6738
AT3G20800			Cell differentiation, Rcd1-lik...		Lus10015136 [exp]	22.4	0.6777

Compare expression of checked genes

Lus10034447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.