Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30500 292 / 3e-92 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT5G58320 291 / 1e-91 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) AT4G14760 102 / 1e-22 kinase interacting (KIP1-like) family protein (.1) AT1G03080 99 / 3e-21 kinase interacting (KIP1-like) family protein (.1) AT4G02710 97 / 1e-20 Kinase interacting (KIP1-like) family protein (.1) AT3G22790 97 / 1e-20 Kinase interacting (KIP1-like) family protein (.1) AT2G22560 91 / 9e-19 Kinase interacting (KIP1-like) family protein (.1) AT1G03470 84 / 6e-18 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT1G09720 84 / 1e-16 Kinase interacting (KIP1-like) family protein (.1) AT5G10500 82 / 5e-16 Kinase interacting (KIP1-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019111 [exp] 911 / 0 AT5G58320 347 / 3e-113 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) Lus10014687 [exp] 103 / 8e-23 AT1G03080 938 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10006896 [exp] 103 / 1e-22 AT1G03080 927 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10022079 [exp] 102 / 2e-22 AT1G03080 1179 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10042627 [exp] 101 / 3e-22 AT4G02710 624 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10039359 [exp] 99 / 3e-21 AT3G22790 1402 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10021908 [exp] 94 / 1e-19 AT4G14760 710 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10041192 [exp] 92 / 3e-19 AT4G14760 744 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10029012 [exp] 91 / 5e-19 AT5G05180 146 / 5e-39 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G158100 [exp] 476 / 1e-162 AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.019G131000 [exp] 432 / 2e-145 AT2G30500 389 / 4e-129 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.019G061600 [exp] 227 / 3e-67 AT5G58320 180 / 8e-50 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) Potri.002G049600 [exp] 100 / 1e-21 AT1G03080 1229 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.010G083300 [exp] 100 / 1e-21 AT3G22790 1306 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.005G213400 [exp] 99 / 2e-21 AT1G03080 1399 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.008G156250 [exp] 96 / 7e-21 AT3G22790 519 / 7e-168 Kinase interacting (KIP1-like) family protein (.1) Potri.002G207700 [exp] 88 / 2e-18 AT2G47920 136 / 2e-37 Kinase interacting (KIP1-like) family protein (.1) Potri.005G147300 [exp] 89 / 3e-18 AT2G22560 421 / 2e-131 Kinase interacting (KIP1-like) family protein (.1) Potri.007G011300 [exp] 88 / 5e-18 AT2G22560 851 / 0.0 Kinase interacting (KIP1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07765 [flax] [poplar] KIP1 KIP1-like protein
Representative CDS sequence Show only first row Show all	>Lus10034448 pacid=23175958 polypeptide=Lus10034448 locus=Lus10034448.g ID=Lus10034448.BGIv1.0 annot-version=v1.0 ATGGATCGCAACATCAAGCGGATGCTGAAGCTGATTGAAGAGGATGGAGATTCATTTGCCAAAAAGGCTGAGATGTATTATCAGAAAAGGCCAGAATTGA TCTCTCTTGTCGAGGAGTTCTACCGCATGTATCGGTCTCTAGCAGAGCGTTATGATAATGTGACCGGCGAATTGAGAAAGAGTATCCCCGTAGATCTCCA ATCTCAGGGCTCCAGTGCCTCTGATCTCGCATCTGAACCATCGTCTTCTCTTGCATCTCCTGTCCCTGATCAAAAGCTAAGTTCTCGAAAATCAGGTCCC AGGGCTGCTGGTTTCGACTTCTTCCTTGGTTCTGCGGAATCTAACTCTGATCACGGCCACAAAGAAGGGAATGAATCATCGTCACTGTCAGATTCAGATT CTGAGTCAGACAATTCATCGGTTAACAATTACTCAGGTCTAATAATAGGTTCTGCTGCTGATCAAGCATTGACCAGGAAGATTGTGGAATTAGAATCTGA GCTTCGTGAAACAAAGGAGAAACTCCGCATTCTTCAAGAGCAACAAGAAGGAACCCAAAAGGAGAATCATTCTGACGACCTTCTTTCCAGAATTGCTGAA TTCGAGCTTGAACTAAAGAGAGCAAATGAAAGAATCCACCTTTCGGAAGAAGAGACTGTTCGGTTGAAATCCGAGCTCGAGAAGTTCAAATCTTCGGCCA ATGCCAACGCAAAGGATGATGGAGGAGACGAAGTGAAGATAAACCAATCAATTGAAATTCAGGAAGCTGAAACTTTAACCTCAAGCGGACAGATTCAGAT TCAGTCACTAACTGAAGAACTCAGTATCACAAAATCCAAGCTTGAAGATTCCGAGAAAGAAATAGGTAGTTTGAAACAGCAGCTTGCATCGGCCCGCAAG GATCTAACCACATGGAAAAACAAATTGAATGCAGAACGAAAAGAGGTGTCGAAGCTGCAAGAAAGAGTTTCGCGATTGAAAACCAGCTTAACAGACCGGG ATCAAGAGGTAAGAGAATTGAAAACTGCAGTTTCAGATGCTGAGGAGAAGATATTCCCCGAAAAAGCACAGATCAAAGCGGAAATGTCGAAGCTGGTTGA GGAACAAAGTACACTCATGGAGCAACTGAGGGAATGGGAATCTCGAGGCCGTTCTTTAGAGGACGACATCAGAACGCTGCAAGCTGAGAAATTAGAAATG GAGGTAAGACACTGCTCCGAAACAGAGCAGATGAAGGCTGAGATTGAAAATCGTGACGGACACATAGCGAGGCTGGAGTCACTAATGAGCACGTTGAGAT CGGAGAAGGAGAAGTTGAAGGTGAGAGCAAATGCAATGGAGGAAGAGTTGGTTTCTCGGGAGTATCAGATTGGTGCGATGGAGAAGCACTTGGAGGAGTT GCATAGGGAACTTGCAGCGGTGACATCGGTGGTGGAGAAGGCGCGGATGAAAGCAGCGGAGATGGAAGAGGAGGTGGGAAAGCAGAGGAAGCTGGTGGAG GAAAGTGCGGAGGAGAAACGTGAGGCGATAAGGCAGCTGTGTTTGTCGATAGAATTTTACAGAGTTGGGTATCATGAACTGAGGTTGGCGTTTGCTGGGG GTGGGCATGGGAGTAATGGAAGATCAGTTGCTGTGATGGCTGCATAG
AA sequence Show only first row Show all	>Lus10034448 pacid=23175958 polypeptide=Lus10034448 locus=Lus10034448.g ID=Lus10034448.BGIv1.0 annot-version=v1.0 MDRNIKRMLKLIEEDGDSFAKKAEMYYQKRPELISLVEEFYRMYRSLAERYDNVTGELRKSIPVDLQSQGSSASDLASEPSSSLASPVPDQKLSSRKSGP RAAGFDFFLGSAESNSDHGHKEGNESSSLSDSDSESDNSSVNNYSGLIIGSAADQALTRKIVELESELRETKEKLRILQEQQEGTQKENHSDDLLSRIAE FELELKRANERIHLSEEETVRLKSELEKFKSSANANAKDDGGDEVKINQSIEIQEAETLTSSGQIQIQSLTEELSITKSKLEDSEKEIGSLKQQLASARK DLTTWKNKLNAERKEVSKLQERVSRLKTSLTDRDQEVRELKTAVSDAEEKIFPEKAQIKAEMSKLVEEQSTLMEQLREWESRGRSLEDDIRTLQAEKLEM EVRHCSETEQMKAEIENRDGHIARLESLMSTLRSEKEKLKVRANAMEEELVSREYQIGAMEKHLEELHRELAAVTSVVEKARMKAAEMEEEVGKQRKLVE ESAEEKREAIRQLCLSIEFYRVGYHELRLAFAGGGHGSNGRSVAVMAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58320			Kinase interacting (KIP1-like)...		Lus10034448 [exp]	0	1
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Lus10028761 [exp]	1.7	0.8090
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Lus10028760 [exp]	4.9	0.7838
AT3G23160			Protein of unknown function (D...		Lus10021210 [exp]	5.7	0.7577
AT1G70140		ATFH8	formin 8 (.1)		Lus10010724 [exp]	5.9	0.7816
AT1G07630		PLL5	pol-like 5 (.1)		Lus10040823 [exp]	8.0	0.7872
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10026403 [exp]	8.2	0.7891
AT3G10120			unknown protein		Lus10021358 [exp]	8.7	0.7870
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Lus10022577 [exp]	10.8	0.7889
AT4G13330			S-adenosyl-L-methionine-depend...		Lus10023725 [exp]	11.8	0.6873
AT1G11190		ENDO1, BFN1	ENDONUCLEASE 1, bifunctional n...		Lus10018452 [exp]	13.6	0.7778

Compare expression of checked genes

Lus10034448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.