Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30490 817 / 0 REF3, CYP73A5, ATC4H REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) AT2G40890 243 / 2e-74 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT3G48280 212 / 1e-62 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT4G22710 206 / 4e-60 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT4G22690 205 / 2e-59 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT3G26280 204 / 2e-59 CYP71B4 "cytochrome P450, family 71, subfamily B, polypeptide 4", cytochrome P450, family 71, subfamily B, polypeptide 4 (.1) AT5G07990 203 / 5e-59 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT3G48290 202 / 8e-59 CYP71A24 "cytochrome P450, family 71, subfamily A, polypeptide 24", cytochrome P450, family 71, subfamily A, polypeptide 24 (.1.2) AT3G48270 201 / 2e-58 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT4G13770 201 / 3e-58 REF2, CYP83A1 REDUCED EPIDERMAL FLUORESCENCE 2, "cytochrome P450, family 83, subfamily A, polypeptide 1", cytochrome P450, family 83, subfamily A, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035011 [exp] 857 / 0 AT2G30490 867 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10021671 [exp] 750 / 0 AT2G30490 778 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10027598 [exp] 591 / 0 AT2G30490 630 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10019110 [exp] 570 / 0 AT2G30490 555 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10020847 [exp] 225 / 2e-67 AT2G40890 859 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10033524 [exp] 225 / 3e-67 AT2G40890 866 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10019457 [exp] 222 / 3e-66 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10043308 [exp] 218 / 1e-64 AT3G48280 463 / 5e-160 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10017961 [exp] 208 / 8e-61 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G157900 [exp] 864 / 0 AT2G30490 826 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Potri.019G130700 [exp] 838 / 0 AT2G30490 812 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Potri.018G146100 [exp] 609 / 0 AT2G30490 622 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Potri.016G031000 [exp] 228 / 1e-68 AT2G40890 776 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.006G033300 [exp] 226 / 8e-68 AT2G40890 897 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.016G031100 [exp] 224 / 7e-67 AT2G40890 796 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.007G083500 [exp] 213 / 5e-63 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G082900 [exp] 213 / 5e-63 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.015G086000 [exp] 208 / 6e-61 AT1G13080 434 / 2e-148 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) Potri.007G084800 [exp] 207 / 7e-61 AT3G26300 380 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10034449 pacid=23176082 polypeptide=Lus10034449 locus=Lus10034449.g ID=Lus10034449.BGIv1.0 annot-version=v1.0 ATGGATCTCCGCCTCCTGGAGAAGACACTCTTAGCTCTCTTCTCCGCCGTCATCGTCGCCATTGTAATCTCTAAGCTCCGCGGCAAGCGATTCAAGCTCC CACCTGGTCCCATACCCGTCCCTCTCTTCGGCAATTGGCTCCAGGTCGGCGATGACCTCAACCACCGCAACCTCACCGACCTCGCCAAGAGGTTCGGCGA GATCTTCCTCCTCCGTATGGGCCAGCGCAACCTCGTCGTCGTCTCCTCCCCTGACCTCGCCAAGGAGGTCCTCCACACTCAGGGAGTCGAGTTCGGCTCC AGGACTCGCAACGTCGTCTTCGACATCTTCACCGGCAAGGGACAGGACATGGTGTTCACCGTCTACGGCGAGCACTGGCGCAAGATGCGCCGGATCATGA CTGTTCCGTTCTTCACCAACAAGGTCGTCCAGCAGAACCGCCAGGGTTGGGAGGACGAGGCCGCCGCCGTCGTTGAGGACGTGAAGAAGAATCCCGAGGC CCCCACCAATGGAATCGTGCTCCGCCGCCGACTCCAGCTGATGATGTACAACAACATATTCCGGATCATGTTTGACCGGAGGTTCGAATCGGAGCAGGAT CCGTTGTTTAATAAGCTCAAGGCATTGAACGGAGAGCGGAGTCGGTTGGCTCAGAGCTTCGAGTATAACTATGGAGATTTTATCCCGATTTTGAGGCCTT TCTTGAGGGGCTATTTGAAGGTCTGTGAGGAGGTCAAGAACAGGAGGCTTCAGCTATTCAAGGATTACTTCGTTGAGGAGAGGAAGAGACTGATGAGCTC AAGTGCGATGACGAACGAAGGGCTGAAGTGCGCGATGGATCACATTCTGGAAGCACAGCAGAAGGGTGAGATCAACGAAGACAATGCACTCTACATCGTC GAGAACATCAACGTCGCTGCTATCGAGACTACACTGTGGTCAATCGAGTGGGGGATCGCCGAGCTCGTAAACCACCAACAAATCCAGAACAAGCTGAGGC AAGAACTCGACACCGTTCTGGGACCAGACCACCAGATCACCGAGCCCGACATCCAGAAGCTGCCATACCTTCAGGCAGTGGTCAAGGAGACTCTCCGTCT CAGGATGGCCATCCCTCTGCTGGTCCCACACATGAACCTCCACGATGCCAAGCTCCGAGGATTCGACATCCCAGCAGAGAGCAAAATCCTGGTGAACGCG TGGTGGCTGGCCAACAACCCCGAACAGTGGAAGAGGCCCGAGGAGTTCAGACCGGAGAGGTTCTTGGAAGAGGAGGCTAAAGTCGAGGCCAACGGAAATG ACTTCAGGTACCTCCCGTTCGGAGTCGGGAGGAGGAGCTGCCCTGGAATCATTCTTGCACTCCCCATTTTGGGGATTACGATAGGGCGTCTGGTGCAGAA CTTCGAGCTGTTGCCTCCTCCAGGGCAGTCAAAGCTGGATACGACTGAGAAAGGTGGTCAGTTTAGTTTGCACATCTTGAAGCACTCGACCATCGTGGCT AAGCCAAGATCGGTTTGA
AA sequence Show only first row Show all	>Lus10034449 pacid=23176082 polypeptide=Lus10034449 locus=Lus10034449.g ID=Lus10034449.BGIv1.0 annot-version=v1.0 MDLRLLEKTLLALFSAVIVAIVISKLRGKRFKLPPGPIPVPLFGNWLQVGDDLNHRNLTDLAKRFGEIFLLRMGQRNLVVVSSPDLAKEVLHTQGVEFGS RTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQNRQGWEDEAAAVVEDVKKNPEAPTNGIVLRRRLQLMMYNNIFRIMFDRRFESEQD PLFNKLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKVCEEVKNRRLQLFKDYFVEERKRLMSSSAMTNEGLKCAMDHILEAQQKGEINEDNALYIV ENINVAAIETTLWSIEWGIAELVNHQQIQNKLRQELDTVLGPDHQITEPDIQKLPYLQAVVKETLRLRMAIPLLVPHMNLHDAKLRGFDIPAESKILVNA WWLANNPEQWKRPEEFRPERFLEEEAKVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFELLPPPGQSKLDTTEKGGQFSLHILKHSTIVA KPRSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10034449 [exp]	0	1
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10035011 [exp]	1.4	0.9782
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10019110 [exp]	1.4	0.9818
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Lus10025739 [exp]	2.4	0.9734
AT1G22410			Class-II DAHP synthetase famil...		Lus10035923 [exp]	4.2	0.9717
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Lus10007907 [exp]	5.1	0.9612
AT2G45300			RNA 3'-terminal phosphate cycl...		Lus10030282 [exp]	6.9	0.9732
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10020549 [exp]	7.4	0.9731
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10005189 [exp]	8.1	0.9324
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10002321 [exp]	9.5	0.9634
AT3G54450			Major facilitator superfamily ...		Lus10039521 [exp]	9.8	0.9614

Compare expression of checked genes

Lus10034449 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.