Plant FIBer expression Database

Lus10034450 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G30480 81 / 9e-18 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019109
[exp]
252 / 2e-84 AT2G30480 92 / 3e-20 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G157800
[exp]
104 / 5e-26 AT2G30480 147 / 2e-36 unknown protein
PFAM info
Representative CDS sequence
>Lus10034450 pacid=23175871 polypeptide=Lus10034450 locus=Lus10034450.g ID=Lus10034450.BGIv1.0 annot-version=v1.0
ATGGATGGAGTAGAGGGTTATTGTGAGGAGAAAAAGATTTGTGAGCAAAATCAGAAGGAGCATCGGTCTCTGGATGTCCTCAGTTTGCTGAACTTGTCAA
GGGATTCTCCACTGTGCAAACCTGCAAATGCAAGTCCATGTGATAACCACCATAAGCACAATGCAGGGTTCTCTAAGGTCAATTGTTCAGAAGTGCAGTG
TAACTTTTCAAAGGATGCACCGGTGACAATTGGCGATTCTTTTAGTCCTTCTGATTCTCTAGAAATACGGGAAGGACATTGTTTACGTAACCGAGCTGAA
AATGCTTTGCCAAAGAAGGTCCTGGTTACTGCTGCAGAAGAAAATCACCCTGACGTTTCTGGTGGAGTTAAGCATGTAAAAGATTTCCAGGAGACAGCAA
CTCAGAAGAAGCTGTCTGTCTTTGATTTGGTCGATGATGATGATGGAGGAAACGTTAAAAGCAGTAAAAGCCCGGCACATGAAGCTCATGTTGCATTTTC
AGTTGATGGGTTGGGTAATGTGGGGTCAGAAACGCCAGTCCAGTCACCACAGCGGCCCGACAGGTAG
AA sequence
>Lus10034450 pacid=23175871 polypeptide=Lus10034450 locus=Lus10034450.g ID=Lus10034450.BGIv1.0 annot-version=v1.0
MDGVEGYCEEKKICEQNQKEHRSLDVLSLLNLSRDSPLCKPANASPCDNHHKHNAGFSKVNCSEVQCNFSKDAPVTIGDSFSPSDSLEIREGHCLRNRAE
NALPKKVLVTAAEENHPDVSGGVKHVKDFQETATQKKLSVFDLVDDDDGGNVKSSKSPAHEAHVAFSVDGLGNVGSETPVQSPQRPDR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G30480 unknown protein Lus10034450
[exp]
0 1
AT1G61140 EDA16 embryo sac development arrest ... Lus10018465
[exp]
4.9 0.6813
AT3G57570 ARM repeat superfamily protein... Lus10026305
[exp]
8.7 0.6616
AT1G16590 REV7, ATREV7 DNA-binding HORMA family prote... Lus10037584
[exp]
14.5 0.6177
AT5G43900 XI-6, XI-2, ATM... MYOSIN XI-6, MYOSIN X1 2, ARAB... Lus10000260
[exp]
16.2 0.6389
AT4G18950 Integrin-linked protein kinase... Lus10002765
[exp]
37.5 0.6372
AT3G54230 SUA suppressor of abi3-5 (.1.2) Lus10010955
[exp]
39.2 0.6430
AT3G08720 ATPK2, ATPK19, ... ARABIDOPSIS THALIANA SERINE/TH... Lus10033125
[exp]
72.2 0.5819
AT3G49490 unknown protein Lus10032925
[exp]
74.8 0.6426
AT5G42140 Regulator of chromosome conden... Lus10042800
[exp]
94.4 0.6254
AT5G66050 Wound-responsive family protei... Lus10041852
[exp]
104.7 0.6176

Lus10034450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.