Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019108 [exp] 470 / 5e-168 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G157800 [exp] 91 / 7e-20 AT2G30480 147 / 2e-36 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034451 pacid=23176015 polypeptide=Lus10034451 locus=Lus10034451.g ID=Lus10034451.BGIv1.0 annot-version=v1.0 ATGGATACCTCAACATCATACCCAACCGAAAGGCATCGTCGGAAACATGAAAATCCCTTTGATGGGCTTGATACTACCATGTATGGTGCCAGCAGCATTG ATGCTGGAGATAGGCATCAGAAAAAATGGGGCAACTCTCATAAAAAAGGGGAGAGATACATGTCTGGAAGATCTCCACCTAGACCAAGTCTGGTGGATCC AGATCTGGGGAATGACTTTGACCCTCTTTTCAAAGAGAAGAGAGGCCGTTACAGTGATTGGTCGTACAAAGAAGGATATAAGGCTTTCAACAATGTACAT CATGGCTCAGAAACGAATCATCCGTTTTCCTTTGTTTCCAAGCCTTGGAATGAAGATCTAAAAGATGCTTTTCCAGTCCACCGTGATCACCAAATCGACT CCATTGCTCCTGAACCATCTGGCGCCAAGCACTTGTATGATTCTCCAACGTACTCACGCCCAAAGGTTAAACATCCGACTTCTCCGGATTTTCAGTTTGA TGGAAGCACTCCGAAATTCGGTACAGATGATGATTTTTTCAATGGAGAATGGTCCGTGCCCCCTAATCTATCATCAGCACAAGCAAGTGTGAGCAATGTC ATGGGATACAACAAACCAAAACGTCAAAAGATGGAAGGATTGGATGATATTGCTTCTGACTTTGGGGAGAATGTGAAAGATGGAGCAGCAGCGTTGGAGA CGTCATCGTCAGTGAACATCCCTGAAAAGTCCAACACCAGCATTGATGATGAAGTGGAGGTTGCAGGAGGACATCGACGACGACATGAAGCAGCTCCCAG GGTTCCTCCTCCCAATAATGCTCGTCAAAGCGACAACAATGCAGATGTGGAACACGAAGGATTTGTTGGGAGGAAGACGGTGACGAGGATGGACAAGTGT GGTGTGGTTTCTTCACCTCAGGTGATGATGCTTGAGAGTTATGTCGTTCAGCTTCTGAGCGTGCAGAAGACGGCACGTGGCGTTTATTAA
AA sequence Show only first row Show all	>Lus10034451 pacid=23176015 polypeptide=Lus10034451 locus=Lus10034451.g ID=Lus10034451.BGIv1.0 annot-version=v1.0 MDTSTSYPTERHRRKHENPFDGLDTTMYGASSIDAGDRHQKKWGNSHKKGERYMSGRSPPRPSLVDPDLGNDFDPLFKEKRGRYSDWSYKEGYKAFNNVH HGSETNHPFSFVSKPWNEDLKDAFPVHRDHQIDSIAPEPSGAKHLYDSPTYSRPKVKHPTSPDFQFDGSTPKFGTDDDFFNGEWSVPPNLSSAQASVSNV MGYNKPKRQKMEGLDDIASDFGENVKDGAAALETSSSVNIPEKSNTSIDDEVEVAGGHRRRHEAAPRVPPPNNARQSDNNADVEHEGFVGRKTVTRMDKC GVVSSPQVMMLESYVVQLLSVQKTARGVY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10034451 [exp]	0	1
AT1G68690		AtPERK9	proline-rich extensin-like rec...		Lus10017898 [exp]	7.1	0.8441
AT4G24110			unknown protein		Lus10001676 [exp]	13.6	0.8773
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Lus10017165 [exp]	26.7	0.8650
AT1G20920			P-loop containing nucleoside t...		Lus10029986 [exp]	33.9	0.8221
AT2G40095			Alpha/beta hydrolase related p...		Lus10014849 [exp]	49.8	0.7924
AT4G10265			Wound-responsive family protei...		Lus10018531 [exp]	57.6	0.8467
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10041646 [exp]	59.4	0.8226
AT3G08760		ATSIK	Protein kinase superfamily pro...		Lus10014168 [exp]	59.9	0.8224
AT4G10265			Wound-responsive family protei...		Lus10018532 [exp]	65.7	0.8392
AT3G10040	Trihelix		sequence-specific DNA binding ...		Lus10008643 [exp]	65.9	0.8355

Compare expression of checked genes

Lus10034451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.