Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57900 355 / 3e-123 SKIP1 SKP1 interacting partner 1 (.1) AT4G30640 295 / 9e-100 RNI-like superfamily protein (.1) AT4G05497 87 / 1e-19 RNI-like superfamily protein (.1) AT4G08980 79 / 1e-16 FBW2 F-BOX WITH WD-40 2 (.1.2.3.4.5) AT4G05460 75 / 4e-15 RNI-like superfamily protein (.1) AT4G05470 74 / 5e-15 RNI-like superfamily protein (.1) AT4G05475 72 / 2e-14 RNI-like superfamily protein (.1) AT5G52480 64 / 8e-12 RNI-like superfamily protein (.1.2) AT4G05490 64 / 2e-11 RNI-like superfamily protein (.1) AT4G03630 62 / 4e-11 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019104 [exp] 623 / 0 AT5G57900 352 / 4e-122 SKP1 interacting partner 1 (.1) Lus10038528 [exp] 83 / 9e-18 AT4G05460 249 / 5e-81 RNI-like superfamily protein (.1) Lus10023277 [exp] 78 / 4e-16 AT4G05460 247 / 3e-80 RNI-like superfamily protein (.1) Lus10036483 [exp] 75 / 6e-15 AT4G08980 347 / 6e-120 F-BOX WITH WD-40 2 (.1.2.3.4.5) Lus10010351 [exp] 72 / 3e-14 AT4G08980 345 / 4e-119 F-BOX WITH WD-40 2 (.1.2.3.4.5) Lus10008704 [exp] 67 / 7e-13 AT4G03630 162 / 4e-50 RNI-like superfamily protein (.1) Lus10034013 [exp] 62 / 3e-10 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10012764 [exp] 61 / 6e-10 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10002913 [exp] 60 / 1e-09 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G104900 [exp] 439 / 4e-156 AT5G57900 377 / 8e-132 SKP1 interacting partner 1 (.1) Potri.002G099100 [exp] 78 / 4e-16 AT4G08980 352 / 1e-121 F-BOX WITH WD-40 2 (.1.2.3.4.5) Potri.013G013100 [exp] 60 / 9e-10 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.006G105400 [exp] 60 / 9e-10 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G195800 [exp] 58 / 3e-09 AT3G58530 477 / 9e-170 RNI-like superfamily protein (.1) Potri.003G179100 [exp] 56 / 1e-08 AT1G80630 494 / 1e-169 RNI-like superfamily protein (.1) Potri.005G022600 [exp] 56 / 2e-08 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.006G254100 [exp] 54 / 5e-08 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.019G123400 [exp] 53 / 1e-07 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.006G068500 [exp] 53 / 2e-07 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10034452 pacid=23175943 polypeptide=Lus10034452 locus=Lus10034452.g ID=Lus10034452.BGIv1.0 annot-version=v1.0 ATGGATGATCCTAACGTCGACCACTCCGCACCTCCCAAGTCGGATCTCCCCGTCGCCGACTGGGCCGATCTTACTCGCGAGTGCTTGCTCAATGTCTTCT CGAGGCTCTCCCTTGAAGACCGATGGCGAGGACCGATGCTTGTCTGCAAGTCCTGGCTCGCTACATCCACTGACTCTTCCCTCCACTTCACGTTCGATCT CGCCGTACGGTTCGATTCAACGCCGGAATCGCCTCGCTGGTGGTCGCCGGAGTTCGAGAGGAGGATCGATTCCATGTTGGGGTCCGTCATCACCTGGAGC AACGGATGCCTCTCCGAGATCCAAACCCGTCACTGCTCCGACAAATCAATCAATCTCGCGGCCGAAAGGTGCCCTAATCTTCAGGCACTTTCAATTCAGA GCTCAGCAAATGTTAGAGATGCATCCATGGCACGACTAGCCTTGAACTGCGCTCAGCTTCGCGAGCTGGACATCAGCTACTGCCACGAAATCTCCGACGA AGCGCTAGCTCTCATTGGTCGAAACTGTCCGAAACTGAAGATTCTGAAGCGGAATTTTCTCAACTGGTTGGATCCTTCGCAGCACCAGGGGATTGTTCCA GACGAGTACCTGGACTCTTGCCCTCAGGAAGGGGATTCGGAAGCTGCCGCAATTGGGAAATGCATGCCAGGATTGGTTCATCTGGAGCTTCGATTCTCCA AGTTGACTGGAAAGGGGATTGGATCAATCTGCCAAGGTTGCTTGGAATTGGAGTACTTGGATCTGTCAGGGTGTGCGAATTTGACAGGGAGGGATATAAT GAACTCTACATCAAGCTTGAAGAATCTGAAACAGGTGAAGAAGCCGAATTTCTACATTCCTAGGTCGTTGATTGGTCACTCAGAAAGGTACGGCCATTGG AATCTCTATGATGATAGGTTTCAGACTGATGCTTTCCGCATCTAG
AA sequence Show only first row Show all	>Lus10034452 pacid=23175943 polypeptide=Lus10034452 locus=Lus10034452.g ID=Lus10034452.BGIv1.0 annot-version=v1.0 MDDPNVDHSAPPKSDLPVADWADLTRECLLNVFSRLSLEDRWRGPMLVCKSWLATSTDSSLHFTFDLAVRFDSTPESPRWWSPEFERRIDSMLGSVITWS NGCLSEIQTRHCSDKSINLAAERCPNLQALSIQSSANVRDASMARLALNCAQLRELDISYCHEISDEALALIGRNCPKLKILKRNFLNWLDPSQHQGIVP DEYLDSCPQEGDSEAAAIGKCMPGLVHLELRFSKLTGKGIGSICQGCLELEYLDLSGCANLTGRDIMNSTSSLKNLKQVKKPNFYIPRSLIGHSERYGHW NLYDDRFQTDAFRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57900		SKIP1	SKP1 interacting partner 1 (.1...		Lus10034452 [exp]	0	1
AT2G31820			Ankyrin repeat family protein ...		Lus10027074 [exp]	1.4	0.8813
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10031746 [exp]	1.4	0.8967
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10031170 [exp]	3.0	0.8795
AT3G06780			glycine-rich protein (.1)		Lus10016828 [exp]	5.3	0.8593
AT1G64140			unknown protein		Lus10032329 [exp]	5.7	0.8394
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10027449 [exp]	7.1	0.8553
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Lus10003698 [exp]	8.5	0.8514
AT1G07080			Thioredoxin superfamily protei...		Lus10042270 [exp]	9.2	0.8438
AT3G06170			Serinc-domain containing serin...		Lus10034023 [exp]	9.5	0.8373
AT1G26800			RING/U-box superfamily protein...		Lus10037170 [exp]	10.8	0.8386

Compare expression of checked genes

Lus10034452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.