Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14800 350 / 2e-122 EMB2772, AT-P5C1, AT-P5R, P5CR EMBRYO DEFECTIVE 2772, pyrroline-5- carboxylate (P5C) reductase (.1), pyrroline-5- carboxylate (P5C) reductase (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019103 [exp] 442 / 9e-159 AT5G14800 416 / 3e-148 EMBRYO DEFECTIVE 2772, pyrroline-5- carboxylate (P5C) reductase (.1), pyrroline-5- carboxylate (P5C) reductase (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G042600 [exp] 361 / 1e-126 AT5G14800 416 / 4e-148 EMBRYO DEFECTIVE 2772, pyrroline-5- carboxylate (P5C) reductase (.1), pyrroline-5- carboxylate (P5C) reductase (.2) Potri.016G007450 [exp] 51 / 4e-08 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03807 [flax] [poplar] F420_oxidored NADP oxidoreductase coenzyme F420-dependent
Representative CDS sequence Show only first row Show all	>Lus10034453 pacid=23175888 polypeptide=Lus10034453 locus=Lus10034453.g ID=Lus10034453.BGIv1.0 annot-version=v1.0 ATGACGACTCCTCAGATTCCAGTGGACACATACAAGTTGGGATTCATTGGTGCAGGGAAAATGGCGGAGAGCATCGCTAAAGGTGTGGTTCAGTCGGGTA TTCTCCCACCTTCCCGCATTTCTACTGCTCACTCAAACCCAGCTCGCCGCTCTGCCTTTGAGTCACTGGGGGTCAATGTTTTCTCTCAGAATCAGCAAGT TGTAGAAGACAGCGATGTGGTTGTATTTTCTGTGAAGCCCCAAGTTGTTAAGGATGTGGTCCTCCAGCTACAGCCCTTGCTTTCAAAGAAAAAGCTTTTG GTTTCAGTTGCTGCTGGCGTAAAACTAAAAGACTTGCAGTTGTGGGCAGGGAACGAAAGATTTATTAGGGTAATGCCTAACACTCCTGCTGCAGTGGGAG AGGCAGCAACAGTCATGAGTTTGGGTGCAGCTGCAACTGAGGAGGATGGAGAACTGATATCGAAGTTATTTGGATCTGTTGGCAAGATATGGAAAGCTAA TGAGAAGTTATTTGATGCCATAACTGGTCTGAGTGGGAGTGGCCCGGCCTACATATATATAGCAATAGAAGCATTGGCTGATGGAGGCGTTGCAGCTGGT CTACCACGGGAACTAGCGCTGGGTCTAGCTTCTCAAACGGTTTTGGGGGCAGCAACAATGGTGTGTAAAAGTGGAAAGCATCCAGGGGTGCTTAAGGACG AAGTTGCATCACCGGGAGGAACAACGATTGCTGGTATACATGAGCTCGAGAAGGATGGATTTCGCGGCTTGCTAATGAATGCTGTTGTTGGTGCTGCCAA GCGCAGCCGAGAACTCGCTTAG
AA sequence Show only first row Show all	>Lus10034453 pacid=23175888 polypeptide=Lus10034453 locus=Lus10034453.g ID=Lus10034453.BGIv1.0 annot-version=v1.0 MTTPQIPVDTYKLGFIGAGKMAESIAKGVVQSGILPPSRISTAHSNPARRSAFESLGVNVFSQNQQVVEDSDVVVFSVKPQVVKDVVLQLQPLLSKKKLL VSVAAGVKLKDLQLWAGNERFIRVMPNTPAAVGEAATVMSLGAAATEEDGELISKLFGSVGKIWKANEKLFDAITGLSGSGPAYIYIAIEALADGGVAAG LPRELALGLASQTVLGAATMVCKSGKHPGVLKDEVASPGGTTIAGIHELEKDGFRGLLMNAVVGAAKRSRELA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14800		EMB2772, AT-P5C...	EMBRYO DEFECTIVE 2772, pyrroli...		Lus10034453 [exp]	0	1
AT2G46000			unknown protein		Lus10018829 [exp]	12.5	0.8243
AT5G13100			unknown protein		Lus10037045 [exp]	19.5	0.8101
AT4G14700		ORC1, ATORC1A, ...	origin recognition complex 1 (...		Lus10031279 [exp]	29.0	0.8006
AT3G53740			Ribosomal protein L36e family ...		Lus10025342 [exp]	30.7	0.8079
AT3G10430			F-box and associated interacti...		Lus10007848 [exp]	34.6	0.7233
AT4G29830		VIP3	vernalization independence 3, ...		Lus10021571 [exp]	37.4	0.8072
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Lus10017412 [exp]	46.6	0.8044
AT1G08530			unknown protein		Lus10021985 [exp]	50.6	0.7421
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Lus10015020 [exp]	58.1	0.7840
AT1G02140		MAGO, HAP1, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10029791 [exp]	59.9	0.7888

Compare expression of checked genes

Lus10034453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.