Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47550 262 / 3e-87 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) AT2G02960 244 / 3e-80 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) AT5G62460 240 / 2e-78 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14260 200 / 2e-63 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT2G01275 126 / 8e-35 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G38070 121 / 8e-33 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G02075 104 / 8e-27 PIT1 pitchoun 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G02610 92 / 3e-22 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G34100 55 / 4e-08 RING/U-box superfamily protein (.1.2) AT4G32670 53 / 1e-07 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019102 [exp] 493 / 3e-178 AT3G47550 295 / 5e-100 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10021670 [exp] 377 / 3e-132 AT3G47550 275 / 7e-92 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10035010 [exp] 364 / 3e-127 AT3G47550 284 / 8e-96 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10037172 [exp] 279 / 5e-94 AT2G02960 303 / 5e-104 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10012826 [exp] 278 / 2e-93 AT2G02960 310 / 2e-106 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10036754 [exp] 273 / 2e-91 AT2G02960 315 / 1e-108 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10030472 [exp] 212 / 3e-67 AT2G02960 221 / 4e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10004058 [exp] 151 / 2e-44 AT2G01275 251 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10002282 [exp] 152 / 3e-44 AT5G38070 219 / 6e-71 RING/FYVE/PHD zinc finger superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G169200 [exp] 292 / 5e-99 AT3G47550 253 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Potri.008G086300 [exp] 287 / 4e-97 AT2G02960 252 / 9e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.004G093500 [exp] 157 / 2e-46 AT2G01275 238 / 9e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.013G126600 [exp] 153 / 4e-45 AT2G02960 159 / 9e-48 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.019G111700 [exp] 152 / 8e-45 AT2G02960 156 / 1e-46 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.017G122300 [exp] 147 / 3e-43 AT2G01275 246 / 4e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.010G115600 [exp] 145 / 4e-42 AT2G01275 248 / 1e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.008G127400 [exp] 144 / 2e-41 AT2G01275 266 / 1e-89 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.014G121900 [exp] 108 / 4e-28 AT1G02610 181 / 2e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.002G196600 [exp] 101 / 9e-26 AT1G02610 183 / 2e-58 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0229 [flax] [poplar] PF12428 [flax] [poplar] DUF3675 Protein of unknown function (DUF3675)
Representative CDS sequence Show only first row Show all	>Lus10034454 pacid=23175974 polypeptide=Lus10034454 locus=Lus10034454.g ID=Lus10034454.BGIv1.0 annot-version=v1.0 ATGAGCGATCATCTGGACTCGGGTGTTGATCGTAATATTGCACCTGAGAATGGACAAGTAGGACAAGGTGCTGACGTACTTCAATCTTCCGGGGACTGCT CTTCTTCTCAGCCTGTTGAGAAACCCACGTGTTTTATTGGCATCGAGCGAGAGGGAGAACATGATGTATGCGATGAAAATGAGCCACTTATTCAGACAGT AGAATGCAGAATATGCCAGGAGGAAGATAGCCTGGTGAATTTGGAGGTTCCATGTGCTTGTAGTGGTAGCTTGAAGTATGCTCATAGGAAATGTGTTCAG CGATGGTGCAACGAAAAGGGAGACATCAATTGTGAGATATGTCGCACGCCTTACCAATCTGGATATACTGCACCACCACCACAGCCAGAAGACTGTGCAA TTGATATGGGCAGTGACGGTTGGACAATTAATGGCACTCCTTTAGATCTGCACGATCCTAGAATTTTGGCAATGGCTGCTGCTGAACGCCATCTTCTAGA GGCCGAGTATGATGAGTATGCTGATGGTAGTGCAAGTGGGGCTGCGTTTTGTCGCTCTGCTGCTTTAATTCTCATGGCTCTTCTACTGCTGAGGCATGCT ATGTCCATCAACAATTCAGACGGTGATGATGATGTCTCTACAGTTTTCTCCCTTTTCTTGCTTAGAGCTGCTGGCTTTCTTCTGCCATGTTATATAATGG CTTGGGCCATTAGTATCCTTCAACGTAGAAGGCAAAGGCAGGAAGCTGAAGCACTTGCAGCATCAGAAGTTGCCTTCATGATACAGGCTGGCCAACATCG TGGCTTGCATTTCGCGGTGGCGCCTGGTCCCGTAGTAGCTCCACAGCAAGCAGCATCTCCGCACCTACCAGTTTGA
AA sequence Show only first row Show all	>Lus10034454 pacid=23175974 polypeptide=Lus10034454 locus=Lus10034454.g ID=Lus10034454.BGIv1.0 annot-version=v1.0 MSDHLDSGVDRNIAPENGQVGQGADVLQSSGDCSSSQPVEKPTCFIGIEREGEHDVCDENEPLIQTVECRICQEEDSLVNLEVPCACSGSLKYAHRKCVQ RWCNEKGDINCEICRTPYQSGYTAPPPQPEDCAIDMGSDGWTINGTPLDLHDPRILAMAAAERHLLEAEYDEYADGSASGAAFCRSAALILMALLLLRHA MSINNSDGDDDVSTVFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAEALAASEVAFMIQAGQHRGLHFAVAPGPVVAPQQAASPHLPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10034454 [exp]	0	1
AT1G77220			Protein of unknown function (D...		Lus10028621 [exp]	2.8	0.8639
AT1G14780			MAC/Perforin domain-containing...		Lus10041285 [exp]	4.5	0.8652
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10000925 [exp]	4.6	0.8650
AT3G23610		DSPTP1	dual specificity protein phosp...		Lus10006229 [exp]	8.8	0.8545
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Lus10026856 [exp]	9.8	0.7921
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10019478 [exp]	12.4	0.8670
AT3G54680			proteophosphoglycan-related (....		Lus10017694 [exp]	16.9	0.8042
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10021458 [exp]	22.4	0.7573
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10007656 [exp]	23.9	0.8425
AT2G23420		NAPRT2	nicotinate phosphoribosyltrans...		Lus10009367 [exp]	24.2	0.8363

Compare expression of checked genes

Lus10034454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.