Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18790 148 / 3e-42 AtRKD1, RKD1 RWP-RK domain containing 1, RWP-RK domain-containing protein (.1) AT5G66990 146 / 1e-41 RKD3 RWP-RK domain-containing 3, RWP-RK domain-containing protein (.1) AT1G74480 142 / 1e-39 AtRKD2, RKD2 RWP-RK domain containing 2, RWP-RK domain-containing protein (.1) AT5G53040 118 / 5e-31 GRD, RKD4 RWP-RK domain-containing 4, GROUNDED, RWP-RK domain-containing protein (.1) AT4G35590 75 / 7e-15 RKD5 RWP-RK domain-containing 5, RWP-RK domain-containing protein (.1) AT1G64530 56 / 4e-08 NLP6 Plant regulator RWP-RK family protein (.1) AT4G24020 53 / 3e-07 NLP7 NIN like protein 7 (.1) AT1G76350 50 / 2e-06 NLP5 Plant regulator RWP-RK family protein (.1) AT1G20640 50 / 3e-06 NLP4 Plant regulator RWP-RK family protein (.1.2) AT3G59580 49 / 5e-06 NLP9 Plant regulator RWP-RK family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019100 [exp] 295 / 1e-98 AT1G18790 149 / 2e-43 RWP-RK domain containing 1, RWP-RK domain-containing protein (.1) Lus10035008 [exp] 157 / 3e-45 AT1G18790 145 / 6e-42 RWP-RK domain containing 1, RWP-RK domain-containing protein (.1) Lus10005921 [exp] 104 / 1e-25 AT5G53040 143 / 2e-41 RWP-RK domain-containing 4, GROUNDED, RWP-RK domain-containing protein (.1) Lus10004035 [exp] 59 / 2e-09 AT5G16100 68 / 2e-12 unknown protein Lus10023931 [exp] 55 / 4e-08 AT2G17150 164 / 6e-45 Plant regulator RWP-RK family protein (.1.2) Lus10014429 [exp] 54 / 5e-08 AT1G20640 132 / 7e-34 Plant regulator RWP-RK family protein (.1.2) Lus10008143 [exp] 52 / 4e-07 AT3G59580 769 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10019368 [exp] 50 / 2e-06 AT2G43500 764 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10003199 [exp] 50 / 3e-06 AT4G24020 953 / 0.0 NIN like protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G011800 [exp] 117 / 6e-31 AT5G53040 137 / 1e-39 RWP-RK domain-containing 4, GROUNDED, RWP-RK domain-containing protein (.1) Potri.012G016800 [exp] 117 / 1e-30 AT5G53040 138 / 8e-40 RWP-RK domain-containing 4, GROUNDED, RWP-RK domain-containing protein (.1) Potri.005G101000 [exp] 83 / 1e-17 AT4G35590 273 / 5e-90 RWP-RK domain-containing 5, RWP-RK domain-containing protein (.1) Potri.006G223100 [exp] 59 / 2e-09 AT5G16100 72 / 7e-14 unknown protein Potri.003G143000 [exp] 56 / 2e-08 AT4G24020 994 / 0.0 NIN like protein 7 (.1) Potri.009G087500 [exp] 56 / 3e-08 AT4G35270 301 / 5e-92 Plant regulator RWP-RK family protein (.1) Potri.001G087900 [exp] 54 / 1e-07 AT4G24020 991 / 0.0 NIN like protein 7 (.1) Potri.002G058800 [exp] 52 / 2e-07 AT1G06500 95 / 4e-24 unknown protein Potri.001G293300 [exp] 51 / 6e-07 AT4G35270 301 / 7e-92 Plant regulator RWP-RK family protein (.1) Potri.017G018500 [exp] 51 / 1e-06 AT2G43500 811 / 0.0 Plant regulator RWP-RK family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02042 [flax] [poplar] RWP-RK RWP-RK domain
Representative CDS sequence Show only first row Show all	>Lus10034456 pacid=23176113 polypeptide=Lus10034456 locus=Lus10034456.g ID=Lus10034456.BGIv1.0 annot-version=v1.0 ATGGAGTTTGTTGAGGTGAAGCAAGAACAAGATCACTTCCAAATCCGTTCATCACCGCCACTTCTCCATGACGATTCCCAGCAACAAGCGCCATTCGGAG GACTCTTTGACGACTTCACTTTTGGCAGCCATGGTGGTGGGGATGACGACTACTACTCATCATCATCCCTTCCTCCATTCCCATTATTCAATCATCAGTT CGAACTCGAAGCACCTTTTACCCAGCTTGATCAATACTACCAAGATCCCGATATAGTTAATGCTGCCGATGGTGATCGCTACGGTACTGACATCATGAAT ATGATGATCAGTAGTACTAATATTCTTCATCATTCGTCATCTTCATCAATATCATCATCTTCATGTTCTTCCCACATCGATCACGATCCGGTTTGCAACG AACTGGGGCCACCTCTCCTCCCAATCCTTGATCATGAACAGAAAACAACAACGAATGAGCATAACAAAGCGGTTTCGCCAAACGGGCAGCAGGTGATCAC GAGGGAAATGCTGTCGAGGTATTTCTACATGCCGATAACGGAGGCAGCCAAGGAGATGAACGTGGGACTGACCTTACTGAAGAAGAGGTGCAGGGAGCTC GGGGTTCGTAGGTGGCCCCACAGGAAGCTGATGAGCTTAAACACTCTTATATCCAATGTCCGTCACCTCCTCAACAACCAAGAACAAGGTGAAGGTGGTC ACGACGAGGGGGAAGGAGGATTAACGAGGTTGGGGAAGTTGGAGGAAGCGGTAAGGGTGCTCGAGCACGAGCGTAAGGTGCTGGAGGAATGTCCTGATTT GCAGCTGGAGAGTAATACCAAGAGGCTGAGGCAGGCTTGTTTCAAGGCCAACTACAAGAGGAAGCGTAAGCACGGCCTCACGATGATGATTGATCATGAT GATGCATCATGTGGGAGAGGGCGGCCTAGAAATGTGAGCAGATCCGACGTCGTTGTCCAAGATACTACTACTGCTGCTGTTGCTACAAATTTGGGTTATG AAGATGATGATGGGGATGAGGAGATTAGGTCACTTCTGCTCCCGGCGGAGTTTGATTTTGCGTTCTGA
AA sequence Show only first row Show all	>Lus10034456 pacid=23176113 polypeptide=Lus10034456 locus=Lus10034456.g ID=Lus10034456.BGIv1.0 annot-version=v1.0 MEFVEVKQEQDHFQIRSSPPLLHDDSQQQAPFGGLFDDFTFGSHGGGDDDYYSSSSLPPFPLFNHQFELEAPFTQLDQYYQDPDIVNAADGDRYGTDIMN MMISSTNILHHSSSSSISSSSCSSHIDHDPVCNELGPPLLPILDHEQKTTTNEHNKAVSPNGQQVITREMLSRYFYMPITEAAKEMNVGLTLLKKRCREL GVRRWPHRKLMSLNTLISNVRHLLNNQEQGEGGHDEGEGGLTRLGKLEEAVRVLEHERKVLEECPDLQLESNTKRLRQACFKANYKRKRKHGLTMMIDHD DASCGRGRPRNVSRSDVVVQDTTTAAVATNLGYEDDDGDEEIRSLLLPAEFDFAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18790		AtRKD1, RKD1	RWP-RK domain containing 1, RW...		Lus10034456 [exp]	0	1
					Lus10000363 [exp]	3.7	1.0000
AT3G10340		PAL4	phenylalanine ammonia-lyase 4 ...		Lus10001405 [exp]	4.9	1.0000
					Lus10003285 [exp]	6.5	1.0000
					Lus10004996 [exp]	7.5	1.0000
					Lus10025781 [exp]	7.7	1.0000
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10027745 [exp]	8.5	1.0000
AT1G61330			FBD, F-box and Leucine Rich Re...		Lus10006726 [exp]	9.2	1.0000
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10022134 [exp]	11.0	1.0000
AT5G12060			Plant self-incompatibility pro...		Lus10022829 [exp]	11.2	1.0000
					Lus10000977 [exp]	11.8	1.0000

Compare expression of checked genes

Lus10034456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.