Plant FIBer expression Database

Lus10034457 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G49590 427 / 1e-142 ATG13 autophagy-related 13, Autophagy-related protein 13 (.1.2.3)
AT3G18770 166 / 4e-44 Autophagy-related protein 13 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019097
[exp]
1090 / 0 AT3G49590 466 / 4e-158 autophagy-related 13, Autophagy-related protein 13 (.1.2.3)
Lus10006790
[exp]
184 / 7e-51 AT3G18770 380 / 3e-125 Autophagy-related protein 13 (.1)
Lus10005812
[exp]
167 / 6e-45 AT3G18770 385 / 2e-127 Autophagy-related protein 13 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G004400
[exp]
617 / 0 AT3G49590 402 / 9e-133 autophagy-related 13, Autophagy-related protein 13 (.1.2.3)
Potri.001G309800
[exp]
213 / 2e-60 AT3G18770 434 / 2e-144 Autophagy-related protein 13 (.1)
Potri.019G010700
[exp]
183 / 4e-50 AT3G18770 380 / 3e-124 Autophagy-related protein 13 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0651 Mad2 PF10033 ATG13 Autophagy-related protein 13
Representative CDS sequence
>Lus10034457 pacid=23175929 polypeptide=Lus10034457 locus=Lus10034457.g ID=Lus10034457.BGIv1.0 annot-version=v1.0
ATGGATTTGCACGGGGTGGCTCCTCATTTGGAGTCGGGAAAGCTGGAACAAGTGGTGTCGCAGTTTCTTTTGAAGAGCTTGCACATTATATTGGATTCCA
GGATCCCATCTCTTTGTTCTCCACAGGGTCGAACTTGTGACTCCATTACTCGAGTCAAGAAGAGTGACAAATGGTTTAATCTGGTGCTTGGGGATCGCCC
AGCTGCTCTGGATAATCTACATTTCTGGCATAGGAATCTGATGGATCCCATGATCATTAACATTATCCTTGTTCAGCAAGGGTCAACTACTTCTTCTTCG
TCCGTGGACAATTTGCTTTCTGCTTCACCTGGAACTGCAGCAGCCACTGACACAGTTATAGAGAGGTGGCATGTCCAGTTCGAGTCCCCGACACCTTCTA
CTTCCAGGCCGGGTGAGGGTTCTGCATCTTATAAGAAGACGTATAAGAAATCGATCATATTTCTACGCTCCCTATATCTGCAAATGAGGCTTCTTCCAGC
ATACCGGATCTTTAGACAGCTTAGTTCATCCAGCCAGCCTTATAACTTTGATATCATTTACAAGGTTTCGTCTTTCTCAGAACCATTCTCTAGGGCGGAG
GAGGAAATGATGAAGGAATATAGTTTTGTTCCTATTGAAGCCCTTCCTGGAAGGTTACATGTATCAGTGAGTTACCGTGCTCAGCTTTCTGAGTTCAACC
TTCAGCCTTTGACCACTATGCCTCCCAAGATCATATCTGATTATGTTGGAAGCCCTGCCATTGATCCTCTAAGGTATTTCCCGTCTTCTTACAAAGGAGA
TAGTGCTACATCTTTCCCCTCTAAAGGAATCCACTCCCCTACTTCTGTACCTTTCCAGCGACCGCATAGCTGGACGAGTGGCTTCTATAAACCCCCTGCT
AATACTGGCAGCCAGCCCTTTGTTGGATCCCCACCAATTTTCCGCATGTCCCCATTGTCATATGATTCTCCATCTCCACCAATGGACAGGATCCAGAGCC
TTCGACGACCGCATCAAAGGACTCCCTTCCAGGATGAATGCCAACTCTCTCCTCCCTTTTCGCCATCTGTCTCCCCTTCTACTCCGACATACTTGAGAAA
AATTGATAGCCCTAGGCAAATTCATGCCGGTTCAGAGTCTGCACCGGTGACTATTCCATTTCAAATGGCAGGCAGAAGTTCCAGATACATATCTCCCAAC
TTTTCTGATCCTAATAAACATTCTCTGCCACCTTTATCTCCCAGAAGTACACGGAATGATCATTCGTCCAATTCAAATGAATCCCCATCTGCAATAAGGT
TAATGAAGAAATCAGAAGCTTCAAAGCCCGGGGATTTGAGTTACGCTGGTCATAAGGTACTCAGAGATAACAGAGATGATTCAGGGCGGTTTTCGGGATT
GTTATCTTCTAGGAGTTCTAGTAAATTATCTTTCCAGGACGATATAGATGACTGTGACTTCTCATGTCCTTTTGACGTGGATGACGTCGACACGCCAGAC
TCCCAAATCAGTCAGAACCATGAGGGAAAAAGAAGCTTGGAATCAACATCACTAGGTAGGAAATCTCAAGATGCTGCAGTTGGTGTCCTTGTTCATATGT
TGCGGAATGCACCTCCACTGCGACAAGATTCGAGTTGCTACTCTTCCCATTCGTTGAGAGCCGACGTAGAAGATGGAGATGCTGCTGCTGCTACTACAGC
TTCTGGGTTCTTTATGGCGAGGCGGACGGCTGATGCGTTGGAAGAGCTGAGGAGTTACAGGGAGATGAGGGACCTGCTACTCTCTAAAAGCGGAACCAGA
GTGCTCGCCAGAGAGCCGCCGTAA
AA sequence
>Lus10034457 pacid=23175929 polypeptide=Lus10034457 locus=Lus10034457.g ID=Lus10034457.BGIv1.0 annot-version=v1.0
MDLHGVAPHLESGKLEQVVSQFLLKSLHIILDSRIPSLCSPQGRTCDSITRVKKSDKWFNLVLGDRPAALDNLHFWHRNLMDPMIINIILVQQGSTTSSS
SVDNLLSASPGTAAATDTVIERWHVQFESPTPSTSRPGEGSASYKKTYKKSIIFLRSLYLQMRLLPAYRIFRQLSSSSQPYNFDIIYKVSSFSEPFSRAE
EEMMKEYSFVPIEALPGRLHVSVSYRAQLSEFNLQPLTTMPPKIISDYVGSPAIDPLRYFPSSYKGDSATSFPSKGIHSPTSVPFQRPHSWTSGFYKPPA
NTGSQPFVGSPPIFRMSPLSYDSPSPPMDRIQSLRRPHQRTPFQDECQLSPPFSPSVSPSTPTYLRKIDSPRQIHAGSESAPVTIPFQMAGRSSRYISPN
FSDPNKHSLPPLSPRSTRNDHSSNSNESPSAIRLMKKSEASKPGDLSYAGHKVLRDNRDDSGRFSGLLSSRSSSKLSFQDDIDDCDFSCPFDVDDVDTPD
SQISQNHEGKRSLESTSLGRKSQDAAVGVLVHMLRNAPPLRQDSSCYSSHSLRADVEDGDAAAATTASGFFMARRTADALEELRSYREMRDLLLSKSGTR
VLAREPP

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G49590 ATG13 autophagy-related 13, Autophag... Lus10034457
[exp]
0 1
AT3G05530 ATS6A.2, RPT5A regulatory particle triple-A A... Lus10029887
[exp]
4.0 0.7638
AT4G26750 EXT-like extensin-like, hydroxyproline-... Lus10012781
[exp]
8.3 0.7527
AT5G42140 Regulator of chromosome conden... Lus10029772
[exp]
13.0 0.6439
AT3G55830 EPC1 ECTOPICALLY PARTING CELLS, Nuc... Lus10031680
[exp]
13.7 0.7595
AT1G34780 ATAPRL4 APR-like 4 (.1.2) Lus10020928
[exp]
14.7 0.7396
AT4G14220 RHF1A RING-H2 group F1A (.1) Lus10034049
[exp]
16.2 0.7359
AT3G28450 Leucine-rich repeat protein ki... Lus10030812
[exp]
18.0 0.6580
AT2G40810 ATATG18C homolog of yeast autophagy 18C... Lus10001580
[exp]
23.7 0.7372
AT3G62770 ATATG18A autophagy 18a, Transducin/WD40... Lus10041353
[exp]
29.2 0.7518
AT4G30110 ATHMA2, HMA2 ARABIDOPSIS HEAVY METAL ATPASE... Lus10025467
[exp]
30.2 0.7330

Lus10034457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.