Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47520 545 / 0 pNAD-MDH, MDH plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) AT2G22780 394 / 4e-136 PMDH1 peroxisomal NAD-malate dehydrogenase 1 (.1) AT3G15020 380 / 3e-131 mMDH2 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) AT1G53240 379 / 1e-130 mMDH1 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) AT5G09660 373 / 6e-128 PMDH2 peroxisomal NAD-malate dehydrogenase 2 (.1.2.3.4) AT3G53910 86 / 3e-20 malate dehydrogenase-related (.1) AT4G17260 55 / 5e-08 Lactate/malate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019096 [exp] 766 / 0 AT3G47520 575 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10021666 [exp] 624 / 0 AT3G47520 542 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10000275 [exp] 620 / 0 AT3G47520 543 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10017939 [exp] 395 / 6e-137 AT1G53240 578 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Lus10038323 [exp] 386 / 4e-133 AT3G15020 578 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Lus10039642 [exp] 385 / 9e-133 AT2G22780 617 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10012459 [exp] 365 / 1e-124 AT2G22780 578 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10011587 [exp] 363 / 1e-121 AT2G22780 547 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10013680 [exp] 347 / 3e-118 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G102000 [exp] 652 / 0 AT3G47520 591 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.017G101900 [exp] 636 / 0 AT3G47520 580 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.004G112800 [exp] 635 / 0 AT3G47520 583 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.011G096300 [exp] 397 / 6e-138 AT3G15020 541 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.007G009100 [exp] 396 / 3e-137 AT2G22780 612 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.009G081600 [exp] 394 / 2e-136 AT2G22780 602 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.001G376500 [exp] 390 / 9e-135 AT3G15020 523 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.001G287400 [exp] 387 / 1e-133 AT2G22780 588 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.004G054200 [exp] 380 / 4e-131 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.017G152000 [exp] 239 / 6e-77 AT1G53240 277 / 8e-93 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00056 [flax] [poplar] Ldh_1_N lactate/malate dehydrogenase, NAD binding domain CL0341 [flax] [poplar] LDH_C PF02866 [flax] [poplar] Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10034458 pacid=23175848 polypeptide=Lus10034458 locus=Lus10034458.g ID=Lus10034458.BGIv1.0 annot-version=v1.0 ATGGCAGCAACATCAAAACCTACCTTTTCTATTGGATCAACTGTTTCATTTGGTTCTAAAGCAAACCAACTTCTACAGCCAAAAGCTTTTGCTGTGAGGT TAAATTCTCAGAAGCAATTTGCTACCTTCAGTGGTCTTAAGTCAACAGGCTCTGTATATGAATCTTCATTCTTTGGCAAAAAGAGCTATGCTGCATTGCA GAACTCACATCCACAGATGCGTATGAAGGCCACTGAAAGGACGAAGCATCGCCTCAATGCCCAGGCATCATACAAAGTAGCTGTTCTTGGAGCAGCTGGA GGAATTGGTCAACCTCTTGCGTTACTGGTCAAGATGTCTCCATTGGTTTCTACTCTTAATCTCTATGATATCGCAAATGTTAAGGGTGTTGCTGCTGACC TTAGCCACTGCAACACTCCTGCACAAGTGTTTGATTTCACTGGTGCTTCTGAGTTGGGCAATTGTTTGAAAGGCGTCGATGTTGTCGTCATCCCTGCTGG AGTTCCAAGAAAGCCCGGGATGACTCGTGACGATCTCTTTAATATCAATGCCAGCATTGTGAAGAGCTTGGTTGAGGCTGTCGCTGATAACTGCCCTGAT GCTTTCATCCACATCATCAGCAACCCAGTCAACTCCACTGTACCAATTGCAGCAGAAGTGCTGAAGCAGAAGGGTGTTTATGACCCGAAGAAGCTCTTTG GGGTTTCTACTCTTGATGTTGTGAGGGCAAATACATTCGTTGCTCAGAAGAAGAACCTGAGATTAATTGATGTCGATGTCCCAGTTATCGGCGGCCATGC TGGGATTACCATCCTTCCTCTTCTATCCAAGGCAAAACCCTCTGTCGCATTCACCGATGAAGAGATCCACGAGCTAACTGTAAGGATTCAAAATGCTGGT ACAGAAGTTGTCGAGGCAAAAGCAGGTGCTGGATCTGCTACCTTGTCAATGGCTTACGCAGCAGCCAGATTTGTCGAATCGTCTCTACGCGCCCTTGACG GAGATGCTGATGTGTACGAGTGTGCTTTTGTGGACTCTAATCTCACTGACCTTCCGTTCTTTGCGTCGAGAATCAAGCTGGGAAAGAAAGGTGTGGAAGC TCTCATTTCATCCGACCTCCAGGGACTGACCGAGTATGAAGAGAAGGCAGTGGAAGCTCTGAAGGCTGAACTGAAAGCCAGCATTGAGAAGGGCATTAGC TTTGCTCAGAAGCAGTCAGTGGCTTCCTAG
AA sequence Show only first row Show all	>Lus10034458 pacid=23175848 polypeptide=Lus10034458 locus=Lus10034458.g ID=Lus10034458.BGIv1.0 annot-version=v1.0 MAATSKPTFSIGSTVSFGSKANQLLQPKAFAVRLNSQKQFATFSGLKSTGSVYESSFFGKKSYAALQNSHPQMRMKATERTKHRLNAQASYKVAVLGAAG GIGQPLALLVKMSPLVSTLNLYDIANVKGVAADLSHCNTPAQVFDFTGASELGNCLKGVDVVVIPAGVPRKPGMTRDDLFNINASIVKSLVEAVADNCPD AFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVSTLDVVRANTFVAQKKNLRLIDVDVPVIGGHAGITILPLLSKAKPSVAFTDEEIHELTVRIQNAG TEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDADVYECAFVDSNLTDLPFFASRIKLGKKGVEALISSDLQGLTEYEEKAVEALKAELKASIEKGIS FAQKQSVAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10034458 [exp]	0	1
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10029669 [exp]	1.0	0.9057
AT2G38550			Transmembrane proteins 14C (.1...		Lus10025221 [exp]	3.2	0.8917
AT4G34200		EDA9	embryo sac development arrest ...		Lus10014096 [exp]	6.7	0.8834
AT5G10160			Thioesterase superfamily prote...		Lus10020419 [exp]	10.2	0.8417
AT3G16950		PTLPD1, LPD1	lipoamide dehydrogenase 1 (.1....		Lus10016877 [exp]	10.4	0.8592
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Lus10009433 [exp]	11.2	0.8427
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Lus10010042 [exp]	13.3	0.8207
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10012225 [exp]	14.7	0.8610
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10001461 [exp]	15.0	0.8365
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10041467 [exp]	15.1	0.8728

Compare expression of checked genes

Lus10034458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.