Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47490 238 / 1e-77 HNH endonuclease (.1.2.3) AT1G18680 117 / 3e-31 HNH endonuclease domain-containing protein (.1) AT3G15550 44 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019092 [exp] 457 / 2e-163 AT3G47490 206 / 4e-66 HNH endonuclease (.1.2.3) Lus10015728 [exp] 128 / 1e-35 AT1G18680 245 / 8e-84 HNH endonuclease domain-containing protein (.1) Lus10003480 [exp] 128 / 2e-35 AT1G18680 246 / 2e-84 HNH endonuclease domain-containing protein (.1) Lus10035906 [exp] 45 / 8e-05 AT3G15550 585 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G004200 [exp] 236 / 2e-77 AT3G47490 241 / 2e-81 HNH endonuclease (.1.2.3) Potri.012G067700 [exp] 127 / 2e-35 AT1G18680 248 / 9e-85 HNH endonuclease domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0263 [flax] [poplar] His-Me_finger PF01844 [flax] [poplar] HNH HNH endonuclease
Representative CDS sequence Show only first row Show all	>Lus10034462 pacid=23176093 polypeptide=Lus10034462 locus=Lus10034462.g ID=Lus10034462.BGIv1.0 annot-version=v1.0 ATGCCAAGACCGTGGGCTTTCGAGAGGTTAACCCACCACCAGATGGGCTTCCGGCAATTCAAGATTGGCCTCTACGGTGATGCTTCAACCCTAGCGCACG TGGAAGCACCCATGGGAAGCCGGCTCAATCCAAGGGCATATATCGCCAAAAGAACATTAACCTTTCAGAGAAGGCCACCTGCACCACCTACAGACTACAA TGGTGCTGCAACGGTGGGAGCATTGCACAAATTCCCGCCACCGATGGCTGTGGCGGAGGAGAGGCAACTATCGCCGTTGACAGGCCATACGTGGCATAGA ACTCCCACAATCCTGGAACAACAACCCAAGCTCAACAAGCTATTGGGTTTAATATCCGAATCGGTTCCCTCTTCCAACCCGAGTTCAACCAAAACCAAAT TCCCAGCCTTTACTTTCCCCAACGCTATCCTAAACGCCAACTCCGACAACAACCAGATGAAGCCAACCAAGAGGCGCAACCGTCATTCTTCTCCGGCTAG ATCACCGAAACTCGCCGCCGAATTCCCTTCCTCCGATGCTTCCAACACATCTCCCCGCCGGAGAACCCCAGCCGCATCGCTGGTTGAAGGCGAGCTCGCC TCCAATCGCGACACAATTGCTCTCTTCCAGGACCTTCAAATCTCGGAAGACTACGTCAGCTCAGGTCCTGAGCCCAGAAGCTTCCCCAACAGCGTGAAGC TTCAGTGCTGGGAGAAGGCCGACAAGGTGAAGGGTCGTGACCCGGCCCGGTGGCGACGCGACCCGCTCGGTAATATTGTCTTCAGGAAGCTCGTTGGTTG TCCTGGCTGTTTGTGTCATGATTATGACCACATTGTGCCCTACTCCAAGGGAGGAAAAAGCACGCTAGAGAATTGTCAAGTTCTACAGGTGACAGCTAAT CGATCAAAGGGGAACCGAATGGAGCTATCCAAAGCTGAGCTGATCAGCAGGAGTAACTACTGCCGCGTTTCAGTGCTTCATTATCCTGCTGAGTTTGCAG GTCGTGATATGGATCTAGTAGAACTATTGTCATACGGCAATGTACAGCATACCCAGGATTCAGGAGGATGCAGGATCCAATAA
AA sequence Show only first row Show all	>Lus10034462 pacid=23176093 polypeptide=Lus10034462 locus=Lus10034462.g ID=Lus10034462.BGIv1.0 annot-version=v1.0 MPRPWAFERLTHHQMGFRQFKIGLYGDASTLAHVEAPMGSRLNPRAYIAKRTLTFQRRPPAPPTDYNGAATVGALHKFPPPMAVAEERQLSPLTGHTWHR TPTILEQQPKLNKLLGLISESVPSSNPSSTKTKFPAFTFPNAILNANSDNNQMKPTKRRNRHSSPARSPKLAAEFPSSDASNTSPRRRTPAASLVEGELA SNRDTIALFQDLQISEDYVSSGPEPRSFPNSVKLQCWEKADKVKGRDPARWRRDPLGNIVFRKLVGCPGCLCHDYDHIVPYSKGGKSTLENCQVLQVTAN RSKGNRMELSKAELISRSNYCRVSVLHYPAEFAGRDMDLVELLSYGNVQHTQDSGGCRIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47490			HNH endonuclease (.1.2.3)		Lus10034462 [exp]	0	1
AT3G52950			CBS / octicosapeptide/Phox/Bem...		Lus10025698 [exp]	2.2	0.8505
AT3G61860		ATRSP31, At-RS3...	arginine/serine-rich splicing ...		Lus10005986 [exp]	4.9	0.8201
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10002139 [exp]	5.1	0.8504
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10017604 [exp]	8.7	0.8125
AT3G17950			unknown protein		Lus10006150 [exp]	9.5	0.8260
AT2G46620			P-loop containing nucleoside t...		Lus10006295 [exp]	9.9	0.7905
AT3G25280			Major facilitator superfamily ...		Lus10038222 [exp]	10.5	0.7529
AT3G19340			Protein of unknown function (D...		Lus10035127 [exp]	11.4	0.8366
AT1G25220		WEI7, TRP4, ASB...	WEAK ETHYLENE INSENSITIVE7, TR...		Lus10030761 [exp]	12.4	0.7914
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10013606 [exp]	12.6	0.8266

Compare expression of checked genes

Lus10034462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.