Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29000 103 / 1e-27 Calcium-binding EF-hand family protein (.1) AT5G39670 100 / 2e-26 Calcium-binding EF-hand family protein (.1) AT3G47480 82 / 3e-19 Calcium-binding EF-hand family protein (.1) AT1G21550 71 / 1e-15 Calcium-binding EF-hand family protein (.1) AT1G05990 69 / 5e-15 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1) AT4G12860 66 / 1e-13 UNE14 unfertilized embryo sac 14, EF hand calcium-binding protein family (.1) AT5G44460 66 / 3e-13 CML43 calmodulin like 43 (.1) AT4G03290 65 / 3e-13 EF hand calcium-binding protein family (.1) AT4G20780 66 / 4e-13 CML42 calmodulin like 42 (.1) AT3G07490 64 / 5e-13 AtCML3, AGD11 calmodulin-like 3, ARF-GAP domain 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019090 [exp] 358 / 6e-128 AT3G29000 103 / 1e-27 Calcium-binding EF-hand family protein (.1) Lus10042369 [exp] 103 / 1e-27 AT5G39670 133 / 2e-39 Calcium-binding EF-hand family protein (.1) Lus10026301 [exp] 100 / 4e-26 AT5G39670 135 / 5e-40 Calcium-binding EF-hand family protein (.1) Lus10012199 [exp] 99 / 7e-26 AT5G39670 131 / 3e-38 Calcium-binding EF-hand family protein (.1) Lus10007536 [exp] 98 / 2e-25 AT5G39670 131 / 2e-38 Calcium-binding EF-hand family protein (.1) Lus10020389 [exp] 69 / 2e-15 AT3G07490 130 / 1e-40 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10000972 [exp] 68 / 3e-14 AT1G21550 128 / 3e-38 Calcium-binding EF-hand family protein (.1) Lus10009564 [exp] 67 / 8e-14 AT3G07490 233 / 7e-80 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10017174 [exp] 66 / 4e-13 AT4G20780 234 / 4e-79 calmodulin like 42 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G084800 [exp] 100 / 3e-26 AT5G39670 142 / 1e-42 Calcium-binding EF-hand family protein (.1) Potri.004G122900 [exp] 86 / 1e-20 AT5G39670 141 / 3e-42 Calcium-binding EF-hand family protein (.1) Potri.017G029700 [exp] 71 / 4e-15 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.007G128600 [exp] 71 / 5e-15 AT2G43290 218 / 3e-72 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Potri.002G239100 [exp] 69 / 5e-15 AT3G07490 248 / 8e-86 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.002G077300 [exp] 67 / 4e-14 AT1G21550 123 / 3e-36 Calcium-binding EF-hand family protein (.1) Potri.005G183300 [exp] 67 / 7e-14 AT1G21550 136 / 1e-41 Calcium-binding EF-hand family protein (.1) Potri.008G087900 [exp] 67 / 8e-14 AT3G29000 62 / 2e-12 Calcium-binding EF-hand family protein (.1) Potri.012G048200 [exp] 66 / 1e-13 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2) Potri.007G042900 [exp] 66 / 4e-13 AT2G15680 169 / 1e-53 calmodulin-like 30, Calcium-binding EF-hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10034463 pacid=23176005 polypeptide=Lus10034463 locus=Lus10034463.g ID=Lus10034463.BGIv1.0 annot-version=v1.0 ATGGAGAAATCAGCAGTACAACTCGAATCCACTTCTCCGCAAACTAGAGCCTTCGTCTTCATGATGATCATCGACTCCATCATTCTGTTTTCAAGTCTGT TCCATCTAACCCAATCTGTCATGACTCTGCTCTCCTTCCTATGGACGGCCTCGACTCAACTCAAGTCCCAAAGATGTCTACTTGGCACTACTGCTGAAAC TTGCATCACCACAAACTTAAATCAATCCCCAGAATCTTGTTCTATTCCCAGTATCTTAAACAACGACGAGGGAGTGAACATAAGTGACCTGAGGATGGTG TTGGGAAGACTAGGAAACGATTGGCATGACAACGAGAAAAAGGTTTGTTGGAGAGCTAATGACATCACGGCCATGTTCGAGGAGCACGAGCCAAGCGTGG TAGAGGCTAAAGAGGCGTTTGATGTGTTCGACGAGAATGGTGATGGGTTCATTGATGCCAGAGAGTTGAGGAGAGTTCTCTCCAGGCTAGGCTTTCATGA TCAAGCTTCTTCAGAAGCTAACTGCAAAAAGATGATAAGAGCTTACGATGAAAATGGAGATGGGTTAGTGGATTTCCATGAATTTATGAAGCTTTTAGGG AACAGCTTCGCCTAG
AA sequence Show only first row Show all	>Lus10034463 pacid=23176005 polypeptide=Lus10034463 locus=Lus10034463.g ID=Lus10034463.BGIv1.0 annot-version=v1.0 MEKSAVQLESTSPQTRAFVFMMIIDSIILFSSLFHLTQSVMTLLSFLWTASTQLKSQRCLLGTTAETCITTNLNQSPESCSIPSILNNDEGVNISDLRMV LGRLGNDWHDNEKKVCWRANDITAMFEEHEPSVVEAKEAFDVFDENGDGFIDARELRRVLSRLGFHDQASSEANCKKMIRAYDENGDGLVDFHEFMKLLG NSFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29000			Calcium-binding EF-hand family...		Lus10034463 [exp]	0	1
AT3G29000			Calcium-binding EF-hand family...		Lus10019090 [exp]	1.0	0.9457
AT5G23510			unknown protein		Lus10029154 [exp]	1.4	0.9110
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10038126 [exp]	3.3	0.8400
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10036200 [exp]	3.5	0.8888
AT4G27280			Calcium-binding EF-hand family...		Lus10018511 [exp]	4.5	0.8789
AT5G01750			Protein of unknown function (D...		Lus10009093 [exp]	5.5	0.8783
AT1G27180			disease resistance protein (TI...		Lus10018309 [exp]	6.0	0.8619
AT1G60670			Protein of unknown function (D...		Lus10013072 [exp]	7.5	0.8502
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Lus10018546 [exp]	9.1	0.7895
AT1G26660			Prefoldin chaperone subunit fa...		Lus10026631 [exp]	12.0	0.8326

Compare expression of checked genes

Lus10034463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.