Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18750 246 / 2e-75 MADS AGL65, AGL102 AGAMOUS-like 65 (.1.2) AT2G03060 223 / 2e-66 MADS AGL30 AGAMOUS-like 30 (.1.2) AT1G69540 204 / 8e-60 MADS AGL94 AGAMOUS-like 94 (.1) AT1G77980 104 / 3e-24 MADS AGL66 AGAMOUS-like 66 (.1) AT1G22130 99 / 2e-22 MADS AGL104 AGAMOUS-like 104 (.1) AT1G77950 97 / 3e-22 MADS AGL67 AGAMOUS-like 67 (.1.2) AT2G26320 61 / 5e-11 MADS AGL33 AGAMOUS-like 33 (.1) AT5G65070 60 / 6e-10 MADS FCL4, MAF4, AGL69 MADS AFFECTING FLOWERING 4, AGAMOUS-like 69, K-box region and MADS-box transcription factor family protein (.1.2.3) AT3G57230 57 / 9e-09 MADS AGL16 AGAMOUS-like 16 (.1.2) AT3G57390 56 / 2e-08 MADS AGL18 AGAMOUS-like 18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019089 [exp] 595 / 0 AT1G18750 279 / 3e-91 AGAMOUS-like 65 (.1.2) Lus10036761 [exp] 251 / 2e-77 AT2G03060 284 / 5e-93 AGAMOUS-like 30 (.1.2) Lus10026613 [exp] 251 / 5e-77 AT2G03060 308 / 2e-102 AGAMOUS-like 30 (.1.2) Lus10030450 [exp] 242 / 5e-74 AT2G03060 301 / 4e-100 AGAMOUS-like 30 (.1.2) Lus10037166 [exp] 231 / 2e-69 AT2G03060 282 / 2e-92 AGAMOUS-like 30 (.1.2) Lus10022506 [exp] 107 / 3e-25 AT1G22130 277 / 1e-91 AGAMOUS-like 104 (.1) Lus10016810 [exp] 94 / 8e-21 AT1G22130 239 / 5e-77 AGAMOUS-like 104 (.1) Lus10024823 [exp] 77 / 3e-15 AT1G22130 142 / 3e-40 AGAMOUS-like 104 (.1) Lus10018714 [exp] 67 / 4e-12 AT1G22130 122 / 7e-33 AGAMOUS-like 104 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G088200 [exp] 268 / 2e-83 AT2G03060 297 / 4e-98 AGAMOUS-like 30 (.1.2) Potri.010G167300 [exp] 263 / 2e-81 AT2G03060 259 / 4e-83 AGAMOUS-like 30 (.1.2) Potri.007G087500 [exp] 107 / 5e-25 AT1G22130 229 / 9e-73 AGAMOUS-like 104 (.1) Potri.002G092300 [exp] 94 / 1e-20 AT1G22130 313 / 1e-105 AGAMOUS-like 104 (.1) Potri.007G120002 [exp] 64 / 1e-12 AT1G77980 97 / 1e-25 AGAMOUS-like 66 (.1) Potri.002G079000 [exp] 60 / 5e-10 AT5G20240 238 / 2e-80 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Potri.005G182200 [exp] 59 / 1e-09 AT5G20240 244 / 2e-82 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Potri.005G118000 [exp] 58 / 4e-09 AT3G54340 226 / 9e-75 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Potri.005G155300 [exp] 57 / 7e-09 AT2G22540 234 / 8e-78 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.009G084200 [exp] 56 / 1e-08 AT5G60440 211 / 2e-68 AGAMOUS-like 62 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10034464 pacid=23175937 polypeptide=Lus10034464 locus=Lus10034464.g ID=Lus10034464.BGIv1.0 annot-version=v1.0 ATGGGAAGGGTGAAGCTAAAGATAAAGAAATTGGAGCATACCAGTAATCGGCAAGTGACTTATTCGAAACGGAGGCATGGAATACTGAAGAAGGCTAAGG AATTGTCTATACTGTGCGACATTGATATTCTCCTTCTCATGTTTTCTCCCACCGGAAGGCCTACCTTATTCAATGGAGAGCGCGGCATTGAAGACGTCAT CGCGAAATTTGCTCAACTGACTCCTCAGGAAAGAGCAAAACGGAAAATGGAGAGCCTTGAAACTTTGAAGAAGACCTTCAAGAAGTTGGACCATGATGTG AATATACAAGCTTTTTTTGGTGCAAGGGGTCAAACCATTGAGGAGGTAACTGATCAAGTCAGGGCAATGCAAGCTCAGGTTACAGAATTAGACAGGAGAC TGAGCTATTGGATGGATCCAGAGAAAATTGATAGCATAGAACAGATTCAGCAAATGGAAGCTTCAATTCGGGAATCACTTAGCCGAATCAGTTTGCATAA GGAAAACATAAAAAATCACCAACTTATGTCTTTGGATTGCTCTAGCCAGTTTCAGAACGGAATGCAATTGCCTCTGATGATGAACGGTCTGCACGATACA AACTCTCTGTCTTGGCTTGCAAACAATGGTCGCCAAAATCTCGTCCTAACCAATGAGCCAAACGCATTGCATCACAGTTCCATGATGGTTAACTATAAAG ATTATTACAGAGATATGGAATGCTCCATGGAATCCTCAGCAGCTGGCTATCATGGTTTCTTCAGTTTGGAGAAACAACCCGACATAGAAAACCCCGGCTT GATGGACAACATGGGACAGCAAGCTGGCCATTTCAGCGAATTAGGTAGTAGTTCGCGCTTGAGCTTACAACTCGGCGAACAGTTTCCTTACCATGGATAT GGTAGTTTGTGTTTAGCAGCGGATGAGAAGAAGTTCGAGCTGCAGATGGGGAACAATTTAAATGAAAACCACAACGTTTATGAAGTTAACAATAACAACG ACGTTGAAATTTCTAGACCCATGTATGAGGATGGGCACAATAACTGGATACCTGCTGTCGATGGACCTTCTGGTGTTGCAATCTTCGACCAGAACCCTCC TTACCCGCAGGTACAACAGCCCCAATGTGGAAGTTCTACTTTTGTTTTCTGTTTCGACATTGAAGACGTCATCGCGAAATTTGCTCAACTGACTCCTCAG GAAAGAGCAAAACGGTATTCTCCTCATCACCAAATTACTGAACTTTCTAACTCTTACAAGCAGGAGGTAACTGATCAAGTCAGGGCAATGCAAGCTCAGG AAAACATAAAAAATCACCAACTTATGTCTTTGGATTGCTCTAGCCAGTTTCAGAACGGAATGCAATTGCCTCTGATGATGAACGGTCTGCACGATACAAA CTCTCTGTCTTGGCTTGCAAACAATGGTCGCCAAAATCTCGTCCTAACCAATGAGCCAAACGCATTGCATCACAGTTCCATGATGGTTAACTATAAAGAT TATTACAGAGATATGGAATGCTCCATGGAATCCTCAGCAGCTGGCTATCATGGTTTCTTCAGTTTGGAGAAACAACCCGACATAGAAAACCCCGGCTTGA TGGACAACATGGGACAGCAAGCTGGCCATTTCAGCGAATTAGGTAGTAGTTCGCGCTTGAGCTTACAACTCGGCGAACAGTTTCCTTACCATGGATATGG TAGTTTGTGTTTAGCAGCGGATGAGAAGAAGTTCGAGCTGCAGATGGGGAACAATTTAAATGAAAACCACAACGTTTATGAAGTTAACAATAACAACGAC GTTGAAATTTCTAGACCCATGTATGAGGATGGGCACAATAACTGGATACCTGCTGTCGATGGACCTTCTGGTGTTGCAATCTTCGACCAGAACCCTCCTT ACCCGCAGGTGAACAACGTGTTGTGA
AA sequence Show only first row Show all	>Lus10034464 pacid=23175937 polypeptide=Lus10034464 locus=Lus10034464.g ID=Lus10034464.BGIv1.0 annot-version=v1.0 MGRVKLKIKKLEHTSNRQVTYSKRRHGILKKAKELSILCDIDILLLMFSPTGRPTLFNGERGIEDVIAKFAQLTPQERAKRKMESLETLKKTFKKLDHDV NIQAFFGARGQTIEEVTDQVRAMQAQVTELDRRLSYWMDPEKIDSIEQIQQMEASIRESLSRISLHKENIKNHQLMSLDCSSQFQNGMQLPLMMNGLHDT NSLSWLANNGRQNLVLTNEPNALHHSSMMVNYKDYYRDMECSMESSAAGYHGFFSLEKQPDIENPGLMDNMGQQAGHFSELGSSSRLSLQLGEQFPYHGY GSLCLAADEKKFELQMGNNLNENHNVYEVNNNNDVEISRPMYEDGHNNWIPAVDGPSGVAIFDQNPPYPQVQQPQCGSSTFVFCFDIEDVIAKFAQLTPQ ERAKRYSPHHQITELSNSYKQEVTDQVRAMQAQENIKNHQLMSLDCSSQFQNGMQLPLMMNGLHDTNSLSWLANNGRQNLVLTNEPNALHHSSMMVNYKD YYRDMECSMESSAAGYHGFFSLEKQPDIENPGLMDNMGQQAGHFSELGSSSRLSLQLGEQFPYHGYGSLCLAADEKKFELQMGNNLNENHNVYEVNNNND VEISRPMYEDGHNNWIPAVDGPSGVAIFDQNPPYPQVNNVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18750	MADS	AGL65, AGL102	AGAMOUS-like 65 (.1.2)		Lus10034464 [exp]	0	1
AT3G55590			Glucose-1-phosphate adenylyltr...		Lus10014608 [exp]	11.3	0.7505
AT5G27560			Domain of unknown function (DU...		Lus10004486 [exp]	15.7	0.7935
AT5G01510		RUS5	ROOT UV-B SENSITIVE 5, Protein...		Lus10035510 [exp]	16.2	0.7425
AT1G74600		OTP87	organelle transcript processin...		Lus10002054 [exp]	20.2	0.7611
AT1G53250			unknown protein		Lus10042840 [exp]	29.0	0.7606
AT3G56160			Sodium Bile acid symporter fam...		Lus10043384 [exp]	30.8	0.7247
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Lus10023776 [exp]	31.0	0.7369
AT1G65070			DNA mismatch repair protein Mu...		Lus10018187 [exp]	52.0	0.7232
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10009641 [exp]	61.9	0.6238
					Lus10025603 [exp]	73.2	0.7004

Compare expression of checked genes

Lus10034464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.