Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03090 248 / 2e-82 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT1G69530 244 / 1e-80 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT1G26770 243 / 2e-80 ATHEXPALPHA1.1, AT-EXP10, ATEXP10, ATEXPA10 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) AT5G56320 238 / 3e-78 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT2G40610 238 / 5e-78 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT2G39700 229 / 2e-74 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT3G29030 224 / 6e-73 ATEXP5, ATHEXPALPHA1.4, ATEXPA5 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1) AT3G55500 224 / 1e-72 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT5G05290 223 / 3e-72 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT5G02260 218 / 3e-70 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026614 [exp] 250 / 9e-83 AT1G69530 431 / 7e-155 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10037164 [exp] 244 / 2e-80 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10036763 [exp] 243 / 3e-80 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10034227 [exp] 242 / 1e-79 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10033011 [exp] 236 / 3e-77 AT3G29030 389 / 2e-138 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1) Lus10008603 [exp] 231 / 2e-75 AT2G40610 397 / 2e-141 expansin A8 (.1) Lus10030449 [exp] 228 / 8e-75 AT1G69530 364 / 4e-129 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10009917 [exp] 229 / 1e-74 AT2G40610 395 / 9e-141 expansin A8 (.1) Lus10042214 [exp] 228 / 4e-74 AT2G40610 393 / 7e-140 expansin A8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G001100 [exp] 247 / 8e-82 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.010G167200 [exp] 247 / 1e-81 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.008G088300 [exp] 245 / 5e-81 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.013G060800 [exp] 239 / 7e-79 AT2G03090 356 / 1e-125 EXPANSIN 15, expansin A15 (.1) Potri.013G154700 [exp] 236 / 1e-77 AT2G40610 348 / 2e-122 expansin A8 (.1) Potri.004G123200 [exp] 235 / 5e-77 AT1G69530 334 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.019G057500 [exp] 234 / 1e-76 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.017G085300 [exp] 231 / 1e-75 AT1G26770 355 / 5e-125 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) Potri.016G135200 [exp] 226 / 1e-73 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.006G108000 [exp] 226 / 2e-73 AT2G40610 379 / 2e-134 expansin A8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10034465 pacid=23175862 polypeptide=Lus10034465 locus=Lus10034465.g ID=Lus10034465.BGIv1.0 annot-version=v1.0 ATGGGAGGCGCGTGTGGGTACGGGAACTTATACAGCCAAGGCTACGGCACAAACACGGCGGCACTGAGCACAGCGATGTTCAACAACGGCCAGAGCTGCG GCGCCTGCTTCGAGCTCAGGTGTGTCAACGACCAGAGGTGGTGCAAACAATCCGCGTCGGTGATGGTCACCGCCACAAACTTCTGCCCGCCGAACAACGC GCTTCCAAACAACGCAGGAGGGTGGTGCAACCCACCGCTCCACCATTTCGACCTCGCCCAGCCAGTCTTCCAGCAGATTGCTGAGTACAAGGCTGGAATC GTCCCCGTCTCCTACCGGAGGGTAGCGTGTCAGAAGAGAGGAGGAATCAGGTTCACGATCAACGGACACAGCTACTTCAACTTGGTGTTGATAACAAACG TCGGCGGAGCAGGGGATATGGTCACCGCCACAAACTTCTGCCCGCCGAACAACGCCCTTCCGAACAACGCCGGAGGGTGGTGCAACCCACCGCTCCATCA TTTCGACCTCGCGCAGCCAGTCTTCGAGCAGATTGCTCAGTACAAGGCCGGAATCGTCCCCGTCTCCTACCGGAGGGTGGCGTGTCAGAAGAGAGGAGGG ATCAGGTTTACTATCAACGGCCACAGCTACTTCAACTTGGTGCTGATAACCAACGTCGGAGGAGCAGGGGATGTGGTGTCGGCTTCCATCAAAGGTTCCA GAGGAGACTGGCAGCCGATGTCGAGGAACTGGGGGCAGAATTGGCAGAGCAATTCTTTCTTGAACGGACAGAGTCTTTCGTTTCAGATCACCACTAGTGA CGGCCGTACAATTGTGTCTAACGATGTTGCTCCGGCTGGGTGGTCTTTCGGCCAGACTTACACGGGCGTCCAATTCCCCTGA
AA sequence Show only first row Show all	>Lus10034465 pacid=23175862 polypeptide=Lus10034465 locus=Lus10034465.g ID=Lus10034465.BGIv1.0 annot-version=v1.0 MGGACGYGNLYSQGYGTNTAALSTAMFNNGQSCGACFELRCVNDQRWCKQSASVMVTATNFCPPNNALPNNAGGWCNPPLHHFDLAQPVFQQIAEYKAGI VPVSYRRVACQKRGGIRFTINGHSYFNLVLITNVGGAGDMVTATNFCPPNNALPNNAGGWCNPPLHHFDLAQPVFEQIAQYKAGIVPVSYRRVACQKRGG IRFTINGHSYFNLVLITNVGGAGDVVSASIKGSRGDWQPMSRNWGQNWQSNSFLNGQSLSFQITTSDGRTIVSNDVAPAGWSFGQTYTGVQFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03090		ATHEXPALPHA1.3,...	EXPANSIN 15, expansin A15 (.1)		Lus10034465 [exp]	0	1
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10019088 [exp]	1.0	0.9458
AT3G30530	bZIP	ATBZIP42	basic leucine-zipper 42 (.1)		Lus10013059 [exp]	7.5	0.8262
AT4G23460			Adaptin family protein (.1)		Lus10028775 [exp]	10.0	0.8607
AT3G57950			unknown protein		Lus10021036 [exp]	11.0	0.8481
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10012053 [exp]	24.4	0.7769
AT1G16900			Alg9-like mannosyltransferase ...		Lus10042853 [exp]	32.6	0.8139
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10025829 [exp]	48.2	0.8346
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Lus10021126 [exp]	64.5	0.8283
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10025174 [exp]	70.8	0.7745
AT1G16900			Alg9-like mannosyltransferase ...		Lus10028153 [exp]	87.2	0.8085

Compare expression of checked genes

Lus10034465 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.