Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16940 502 / 2e-171 Splicing factor, CC1-like (.1.2.3) AT5G09880 439 / 4e-148 Splicing factor, CC1-like (.1) AT1G48920 72 / 5e-13 ATNUC-L1, PARL1 PARALLEL 1, nucleolin like 1 (.1) AT4G34110 71 / 1e-12 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT5G54900 68 / 5e-12 ATRBP45A RNA-binding protein 45A (.1) AT1G22760 67 / 2e-11 PAB3 poly(A) binding protein 3 (.1) AT3G52380 64 / 6e-11 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT1G11650 65 / 8e-11 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G51120 61 / 8e-11 PABN1, ATPABN1 polyadenylate-binding protein 1 (.1.2.3) AT4G27000 64 / 1e-10 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025075 [exp] 715 / 0 AT2G16940 565 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10027830 [exp] 538 / 0 AT2G16940 553 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10005059 [exp] 518 / 2e-178 AT2G16940 534 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10002093 [exp] 451 / 1e-152 AT5G09880 600 / 0.0 Splicing factor, CC1-like (.1) Lus10000826 [exp] 439 / 9e-148 AT5G09880 589 / 0.0 Splicing factor, CC1-like (.1) Lus10029372 [exp] 75 / 2e-14 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10010370 [exp] 76 / 4e-14 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010042 [exp] 76 / 6e-14 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10016174 [exp] 74 / 6e-14 AT3G52380 275 / 3e-91 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G177000 [exp] 570 / 0 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.009G137200 [exp] 562 / 0 AT2G16940 535 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.005G148100 [exp] 446 / 1e-150 AT5G09880 553 / 0.0 Splicing factor, CC1-like (.1) Potri.007G009800 [exp] 441 / 1e-147 AT5G09880 519 / 9e-180 Splicing factor, CC1-like (.1) Potri.003G149600 [exp] 75 / 8e-14 AT4G19610 646 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Potri.014G025400 [exp] 74 / 2e-13 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.011G138400 [exp] 72 / 3e-13 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G127200 [exp] 71 / 4e-13 AT2G37220 269 / 5e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G304000 [exp] 72 / 6e-13 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.002G124200 [exp] 72 / 9e-13 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10034466 pacid=23176070 polypeptide=Lus10034466 locus=Lus10034466.g ID=Lus10034466.BGIv1.0 annot-version=v1.0 ATGGATTTCGATGAGTACGAGTATTTGGAAAAGGCTGTTGAAAATCCTGAACCTGAAATTGTGAAGGAAACTGTTAACGGAAAGGAGACTGGGAAATCTG GAGAGACAAATCATAATCGGGGCTCAAAGCAGAAAAGTGATGAAAGGGACGAAGAGGATGATGACCACCGTCGCTCGAAGCGGTCGAAATCAAGAGATGA TACCCGTGATCATGATCGTCATAGAGAAAGAGGTTCATCCCGACACCGGTCAGGATCTAAAGATGGAGAAAGGGACCGCCACCGGAGTAGCCGTGATGGC AGAGATAAGGAGAAGGGAAGGGATGGGGAGGAACGAAACGGGAAGGATAGAGACCGAGAACGAGAGAGGGATAGAGATCGTGGCAGGAGAGAACGTGACA GGGAAAGGGAGAAGGGGAAGGATAAGGATGGTGAAAGAGAGCGATCATGTCGAAGTGAGAGCCGATCCGAAAGAGAGAAAAGCAAGGACAGAGAGCCTAG GGAAAGAGAAAGGGAGAGAGATTTTAAAGAACGAGATATGCATACCAGATATGCTAGAGCAATCTTCAGATGGTCTTCCTGGCATTTGGGTCAGGCACAG GATCAGGGTCAGGGCATGGGTTTTAAATGTCTTCTAGACTGTCTGGAAAGATTTAAAAGGTTTCATTGCAGGACTGAGAGTTTTGATATTGGAGGCTTCT ACCAGAGTGTTGATGCAATGTTCTCCATTATCATCCCTGTAAGGAAAAAGGAAGATGGTGCTGAGCCAGAGGCTGATCCGGAGCGGGATCAGAGGACTGT ATTTGCTTATCAGATATGTTTGAAGGCTGATGAAAGAGATGTTTATGAGTTTTTTTCGAGGGCTGGAAAGGTACGAGATGTTCGTCTCATAATGGACCGG AATTCAAGACGGTCAAAGGGTGTCGGGTATATTGAATTCCATGATGTGATGTCAGTACCTATGGCAATTGCACTGTCTGGTCAGCCTCTTCGTGGTGTAC CTGTGATGGTGAAACCTTCAGAGGCTGAGAAGAACCTTGTTCAGTCAACTGCGACTGCATCCATCGGACCAGGTGGAGCAGTAAATCCTTATTCAGGAGG GGCTCGGAGATTGTACGTTGGAAACCTCCATTTTAACATAACAGAAGATCAACTTCGTCAGGTTTTTGAACCTTTTGGTACTGTAGAGTTGGTTCAGCTG CCTGTTGATGAAACTGGGCATTGCAAAGGTTTTGGTTTCATTCAGTTTGCACGTCTTGAGGATGCTAAGAATGCGTTAAACTTGAATGGACAAGTGGAGA TTGCAGGCCGACCTATCAAGGTGTCATCTGTCACTGATCAAACTGGTCAAGACGGAGGGATGAATGCTGCTGATTTTGACGATGATGAGGGTGGTGGTTT GGCACTGAATGCACGGTCTCGGGTTATGTTGATGCAGAAGTTAGATCGCAGTGGCACTTCCTCGAGCTCTCTGGGGAATTCGGCTTCTGGTACTGGTATC TCGTTACCAGCACCACCACCACTGCTGCCTGGTGCTGTGGTTCCTCAGTCTGTTACTTCTCTCCTACCACCTGGAGTGCCCGGTGCCATGATCCCTCCGC TGGAAACAATCGGTGTTCCAAGTGAATGTTTACTGTTGAAGAATATGTTCGATCCCCAAACAGAGACAGAACCAGACTTTGATCAAGATATCAAAGATGA CGTTGAAGACGAATGCTCAAAATTCGGAACCTTGAGGCATATCTATGTGGACAAGAATAGCATGGGTTTAGTGTATCTGCGATTCGAGAATACGCAAGCT GCCATGGGAGCACAACGTGCTCTCCATGGAAGGTGGTTTGCTGGAAAGATGATCACAGCAACATTCATGGTGCCTCCGACGTATGAGCAGAAGTTCCCTG ATAGCAGGTAA
AA sequence Show only first row Show all	>Lus10034466 pacid=23176070 polypeptide=Lus10034466 locus=Lus10034466.g ID=Lus10034466.BGIv1.0 annot-version=v1.0 MDFDEYEYLEKAVENPEPEIVKETVNGKETGKSGETNHNRGSKQKSDERDEEDDDHRRSKRSKSRDDTRDHDRHRERGSSRHRSGSKDGERDRHRSSRDG RDKEKGRDGEERNGKDRDRERERDRDRGRRERDREREKGKDKDGERERSCRSESRSEREKSKDREPRERERERDFKERDMHTRYARAIFRWSSWHLGQAQ DQGQGMGFKCLLDCLERFKRFHCRTESFDIGGFYQSVDAMFSIIIPVRKKEDGAEPEADPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDR NSRRSKGVGYIEFHDVMSVPMAIALSGQPLRGVPVMVKPSEAEKNLVQSTATASIGPGGAVNPYSGGARRLYVGNLHFNITEDQLRQVFEPFGTVELVQL PVDETGHCKGFGFIQFARLEDAKNALNLNGQVEIAGRPIKVSSVTDQTGQDGGMNAADFDDDEGGGLALNARSRVMLMQKLDRSGTSSSSLGNSASGTGI SLPAPPPLLPGAVVPQSVTSLLPPGVPGAMIPPLETIGVPSECLLLKNMFDPQTETEPDFDQDIKDDVEDECSKFGTLRHIYVDKNSMGLVYLRFENTQA AMGAQRALHGRWFAGKMITATFMVPPTYEQKFPDSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16940			Splicing factor, CC1-like (.1....		Lus10034466 [exp]	0	1
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Lus10015564 [exp]	2.0	0.9161
AT5G57280		RID2	root initiation defective 2, S...		Lus10028960 [exp]	2.8	0.9265
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10042559 [exp]	6.0	0.9095
AT5G09380			RNA polymerase III RPC4 (.1)		Lus10019022 [exp]	9.4	0.8998
					Lus10011266 [exp]	9.7	0.9052
AT1G76370			Protein kinase superfamily pro...		Lus10007041 [exp]	14.1	0.9116
AT1G09800			Pseudouridine synthase family ...		Lus10035791 [exp]	19.1	0.9006
AT4G32605			Mitochondrial glycoprotein fam...		Lus10043448 [exp]	22.2	0.8678
AT2G04790			unknown protein		Lus10006402 [exp]	22.4	0.8854
AT2G34260		WDR55	human WDR55 \(WD40 repeat\) ho...		Lus10033342 [exp]	24.3	0.8614

Compare expression of checked genes

Lus10034466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.