Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38540 418 / 3e-145 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G05320 409 / 1e-141 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT2G35660 257 / 1e-81 CTF2B, CTF2A FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2), FAD/NAD(P)-binding oxidoreductase family protein (.3) AT4G15760 238 / 1e-74 MO1 monooxygenase 1 (.1.2) AT2G29720 237 / 5e-74 CTF2B FAD/NAD(P)-binding oxidoreductase family protein (.1) AT4G15765 132 / 1e-35 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G67030 97 / 1e-21 NPQ2, LOS6, IBS3, ATZEP, ATABA1, ABA1 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) AT5G11330 54 / 8e-08 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019729 [exp] 547 / 0 AT4G38540 400 / 4e-138 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10016392 [exp] 502 / 3e-178 AT5G05320 377 / 4e-129 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10016398 [exp] 498 / 6e-175 AT4G38540 358 / 1e-119 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034475 [exp] 449 / 2e-157 AT5G05320 407 / 2e-140 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10025068 [exp] 436 / 7e-152 AT5G05320 410 / 1e-141 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034468 [exp] 315 / 6e-105 AT5G05320 232 / 7e-73 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034817 [exp] 306 / 3e-101 AT4G38540 290 / 8e-95 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034838 [exp] 305 / 2e-100 AT5G05320 285 / 1e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10033385 [exp] 301 / 4e-99 AT5G05320 284 / 3e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G176950 [exp] 497 / 3e-176 AT4G38540 413 / 4e-143 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.004G176750 [exp] 497 / 4e-176 AT4G38540 419 / 4e-145 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.001G307500 [exp] 313 / 6e-104 AT4G38540 295 / 1e-96 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003700 [exp] 289 / 1e-94 AT4G38540 256 / 9e-82 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003600 [exp] 290 / 2e-94 AT4G38540 277 / 3e-89 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003400 [exp] 289 / 2e-94 AT4G38540 283 / 4e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003300 [exp] 288 / 3e-94 AT5G05320 272 / 1e-87 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003500 [exp] 285 / 6e-93 AT5G05320 273 / 4e-88 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003200 [exp] 280 / 2e-91 AT4G38540 268 / 2e-86 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003800 [exp] 280 / 6e-91 AT5G05320 273 / 3e-88 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01494 [flax] [poplar] FAD_binding_3 FAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10034467 pacid=23175996 polypeptide=Lus10034467 locus=Lus10034467.g ID=Lus10034467.BGIv1.0 annot-version=v1.0 ATGGCGGCCATGTTGGAAGAAGAAGTAGTCATCGTTGGAGCTGGCATCGCTGGGCTCGCAACTTCCCTGGCCCTTCACAGGCTTGGAATCAGAAGCCTGG TGTTGGAATCAGCGTCGAGTTTGAGGATAACTGGGTTTGCTCTGGCGACGTGGACTAATGCTTGGAGAGCTCTGGATGCTCTTGGCTTAGGAGATTCTCT TCGCCAGCAACACCAGCTGCTTCATGGAGTGGAGGTTGCTTCCACGATTACCGGAAACGTGAGCGCTCAGATGAGTTTCAGCGGCAGTGGACACGAAGTC CGATGTGTGCAGAGGAAGCTGTTGCTTGAAGCCATGGCCAAGGAGCTTCCTGATGGCACTATAAGGTACTCCTCCAATGTGGTTTCAATGGATGATGAGT CAGGCTGCTTCAAACTGCTGCAGCTTTCTGATGGTACAATTATCAAGACCAAGGTTCTGGTTGGGTGTGATGGAGTGAATTCAGCAGTGGCCAAGTCTCT AGGACTGAAGAAGGCGGCATTCTCAGGAAGATGGGCTATTAGGGGGTCTGCAACATTCCCACAAGGACATGGATACAGCACGAAGTTCCTGCTGTTTGTT GGCAAGGGATTTCGAGCTGGATGTATCCCTTGTGATGACAACACCATCTACTGGTTCTTCACCTGGACTCCCTCTAACCAAGAAGAGGATCTCCAGGACA GCCCAAAAAAGCTGAAGGAATTTGTGCTAACAAAATTCCACGACACACCTTCCATAAAGAGAGTAGTGGAAGCAACAGAAGCTGGCAGAATAATGTCATC CCCATTAAGGTACAGGAAGCCATGGGAGCTTATCTGGGGAACCATAAGCAGAGGCAACGTCTGTGTAGCTGGAGACTCCCTGCATCCGATGACACCGGAT ATAGGCCAAGGCGGCTGCTCGGCGTTGGAAGATGGGGTGGTTCTGGGGAGATGCCTTGGCGAGGCAATATTGCAGAAGAAGAAGGATGTTGAGGGTGGGT TGAAGAGGTATGGGAAAGAGAGGAGATGGAGAAGCATTGAGCTCATAGCTACAGCTTACTTGGTGGGTCGTATACAGCAGAGTGAATGGAAGATTGCGAC TTTTGTGAGGGATCGAGTCTTGGCTAAGTTTCTTGCTGGGTTGTTGCTCAAGAGAGCTGAATATGATTGTGGGAAGCTCACTGCACAGTGA
AA sequence Show only first row Show all	>Lus10034467 pacid=23175996 polypeptide=Lus10034467 locus=Lus10034467.g ID=Lus10034467.BGIv1.0 annot-version=v1.0 MAAMLEEEVVIVGAGIAGLATSLALHRLGIRSLVLESASSLRITGFALATWTNAWRALDALGLGDSLRQQHQLLHGVEVASTITGNVSAQMSFSGSGHEV RCVQRKLLLEAMAKELPDGTIRYSSNVVSMDDESGCFKLLQLSDGTIIKTKVLVGCDGVNSAVAKSLGLKKAAFSGRWAIRGSATFPQGHGYSTKFLLFV GKGFRAGCIPCDDNTIYWFFTWTPSNQEEDLQDSPKKLKEFVLTKFHDTPSIKRVVEATEAGRIMSSPLRYRKPWELIWGTISRGNVCVAGDSLHPMTPD IGQGGCSALEDGVVLGRCLGEAILQKKKDVEGGLKRYGKERRWRSIELIATAYLVGRIQQSEWKIATFVRDRVLAKFLAGLLLKRAEYDCGKLTAQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10034467 [exp]	0	1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000611 [exp]	1.0	0.9794
AT3G26380			Melibiase family protein (.1)		Lus10011407 [exp]	2.0	0.9703
AT5G61820			unknown protein		Lus10017315 [exp]	2.0	0.9755
AT1G13520			Protein of unknown function (D...		Lus10035080 [exp]	2.2	0.9696
AT5G61820			unknown protein		Lus10017316 [exp]	2.4	0.9752
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Lus10008021 [exp]	2.6	0.9688
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10037234 [exp]	3.6	0.9592
AT3G47570			Leucine-rich repeat protein ki...		Lus10020140 [exp]	4.2	0.9649
AT4G17900			PLATZ transcription factor fam...		Lus10004577 [exp]	4.9	0.9689
AT3G51440			Calcium-dependent phosphotries...		Lus10041827 [exp]	5.7	0.9677

Compare expression of checked genes

Lus10034467 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.