Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10170 1318 / 0 ATNFXL1 NF-X-like 1 (.1) AT5G05660 269 / 5e-76 EBI, ATNFXL2 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025071 [exp] 2036 / 0 AT1G10170 1365 / 0.0 NF-X-like 1 (.1) Lus10028286 [exp] 230 / 2e-62 AT5G05660 1131 / 0.0 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1) Lus10040200 [exp] 203 / 1e-53 AT5G05660 1064 / 0.0 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G043700 [exp] 1502 / 0 AT1G10170 1378 / 0.0 NF-X-like 1 (.1) Potri.015G034500 [exp] 1491 / 0 AT1G10170 1363 / 0.0 NF-X-like 1 (.1) Potri.010G188700 [exp] 267 / 3e-75 AT5G05660 1038 / 0.0 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1) Potri.008G068500 [exp] 61 / 8e-10 AT5G05660 171 / 2e-48 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01422 [flax] [poplar] zf-NF-X1 NF-X1 type zinc finger
Representative CDS sequence Show only first row Show all	>Lus10034470 pacid=23176035 polypeptide=Lus10034470 locus=Lus10034470.g ID=Lus10034470.BGIv1.0 annot-version=v1.0 ATGAGCTCTCAACCTAGAGGCGATCGAAGGGATAGGTCTAGATCATCTTCTCAAACTGGGCAGCAGCGTTGGATTCCCCGAGGATCTGCCCCCTCAACAG TTTCTGTCAACAATAACACACCTCCTGCAACTTTCAATCCAAGTTACGTTGATGGAAGAGGTGAGCAGTCGAATGCTAATCCCAATCCGGTACCCCGTGA GCCTAGACCTAAAGGAGCCAGCAATGCTCCTCGTAGTTATGTGGTGGGTCGTCCTGTGAATAATCACAGGAGAGACAAGCAAAGGGAGAAGGGTGATACA CATGCTGTGAAGGAGTTGGTTGATCCGAACTTGCCTCAACTTGTTCAAGAGATACGGGAGAAGCTTGCAAATGGAACTGCCGAGTGCATGATCTGTTATG ATATGGTGCGAAGGTCTGCTCCCATTTGGTCTTGCTCGAGCTGCTATTCCATTTTTCATCTGCACTGTATCAAGAAATGGGTGAGAGCTCCTACTTCGAT CGACATGTCAGCAGATAAGAATCAGGGGTTTAATTGGCGCTGCCCAGGCTGCCAATACGTGCAGCTCACGCCGTTGAAGGAGATCAAGTATCTCTGCTTT TGTGGGAAAAGAACAGATCCACCTTCTGATTTGTATTTGACTCCTCATTCATGTGGAGAGCCATGTGGGAAGCCGCTCGAGAGGCATTTACCAGGTAACT TGGAGACTAAGGAGGATTCTTGCCCTCATAACTGTGTGTTGCAGTGCCACCCCGGTCCCTGCCCACCATGTAAATCATTTGCTCCACCATGCTTGTGTCC TTGCGGGAAGAAAACTATTACCACTAGGTGTTCTGATCGCCAATCCGTTCTCACGTGTGGTCAACAATGTGAAAAGCTTCTTGATTGTCAGCGTCATCGC TGTGAGAGGATGTGCCATGTCGGACCTTGCGATCCTTGTGAAATCCTCGTCACAGCCTCATGCTTTTGCAAGAAAAAGCAGGAGGTTGTTTCTTGCGGAG ACATGTCTGTGAAGGGAGAAGTGAACGTTAAAGACGGGGTGTTTTCCTGCAATTCCAGTTGTGGAAAGCTGCTTGCTTGTGGAAATCATGAATGTGATGA AGTATGTCATCCAGGTCCTTGTGGCAGTTGTGCTTTGATGCCAGGAAGAGTCAAGTCTTGTTATTGCGGAAAGACGAGCTTGCAGGAGGAAAGGAAGTCT TGTTTGGATTCTATTCCTAACTGCTCACAGGTTTGCAGCAAACTTCTTCCCTGTGGAATTCACAACTGTGAAAACTTGTGCCATTCTGGTGATTGCCCAC CTTGTATGGTCAGTGTCTCGCAAAAATGTCAATGTGGATCAACCTCCCGAATTGTGGCATGTTACCAAACAAGTGCTGAAAGTGAAAAATTTAAGTGTGA CAAGCCCTGTGGTCGCAAGAAGAACTGCGGGAGGCATCGGTGCAGTGAACGTTGCTGCCCTCTTTCGAATCCGAATCCTGTTCGGTCTGAGGATTGGGAT CCACACTTCTGCCAAATGGCGTGTGGGAAGAAGTTGAGGTGTGGTCAACATTCTTGTGAATCTCTGTGTCACAGTGGTCACTGTCCTCCCTGTCTCGAGA CAATATTCAGTGATTTAACTTGTGCCTGTGGAAGGACTTCAATCCCTCCGCCATTGCCGTGTGGTACACCGCCACCTTCATGTCAGCTCCCATGTTCAGT TCCTCAACCTTGTGGGCATTTGGCTTCTCATAGCTGCCACTACGGGGACTGCCCTCCTTGTTCAGTGCCTGTTGCAAAGGAATGTGTTGGTGGGCATGTG GTTCTTAAAAACATACCATGCGGGTCAAAAGACATAAGGTGTAATAAGCTCTGTGGTAAAACTAGGCAGTGTGGTCTTCATGCATGTGGGCGAACTTGTC ATCCAGCACCATGTGACTCTTCTGGTACAACTGGTGCAGGGGTGGCAAGAGTTTCTTGTGGCCAGACATGTGGGGCACCCAGAAGGGACTGCAGGCATAC TTGTGCAGCACTTTGTCATCCTTCTTCTCCTTGCCCAGATGTGAGATGTAAGTTGACGATTAGTTGCTCATGTGGCAGGATAACAGCTAGTGTGCCATGT GATGCTGGAGGGACCAATGCTGGTTATAGTGCCGATACGGTCTTTGATGCTTCCATAGCACATAAGTTGCCAGCACCGCTTCAACCAGTGGAATCAACTG GTTCGAGGATCCCACTTGGCCAACGGAAGCTCACCTGTGATGAGGAATGCGCTAAGTCAGAGCGTAAGAGGGTTCTCGCTGATGCTTTTGACATTGGTAC CCCGAATTTCGAAGCTCTTCATTTTGGCGAGAACTCGCAGGTGACGGAATTGATTGTTGATTTATATAGGCGTGACCCGAAATGGGTTATTGGCGTGGAA GAGAGGTGCAAGTACCTTGTACTTGGGAAGAGCAAGGGAACTGTAGGTGGTCTAAAGGTTCACGTTTTTTGTCCAATGATGAAGGACAAGCGAGATGCAG TTAGGTTGATTGCAGAGAGGTGGAAGCTATCGATAAACGTTGCTGGTTGGGAGCCGAAGCGGTTCGTTGTGCTTCATGCAACTCCCAAGTCCAGACCCCC TTCTCGTGTAATTTGTGTCAAGGGAACTACTACGAATCCACACTCACCGGCTTTTGATCCCTTGGTTGACATGGATCCCAGACTTGTTGTTTCGTTTCTC GATTTGCCTCGGGAAGCAGATGTGAGCTCGTTGGTCCTTAGGTTTGGTGGAGAATGTGAGCTGATATGGTTAAATGACAAGAATGCGTTGGCTGTATTCA GTGACCCTGCTCGTGCAGCAACTGCTCTGAGGAGGTTGGATCATGCATCAGCATATTACGGAGTGGCCGTGGTTCTTCAGAACACTGGCCCGGGTGGTGC CTGGGGAGCAATGGGTACCTCCGCTAGAGAAGGTGGAGGAGTGTCTGCCACATTGAAGGGGGCCAGTGCGTGGAAGAAGGCTGTTACTCGGGTCGATTTT TGGGGTGGCGAAGAACAACGACCTGTAAGTTCCATGGATGCTCAAAGCTCTCCCTGGAAACAAAAAGAAGCTGCCGTAACCGCTTCAATCAATCGTTGGA GTGTTCTGGACTCGGAATCATCGTCCAGTAACGGTGCTTCGTTGATCGGAGTTAAGAAGCAAGGTGGAAGCCATTCTGGTTCAGGTTCTGGTTCGAGTTT ACTCCCTCATGATGCAGTTGTCCCGGAGGGAGAGTCGGCAGAAGTGGTGGATGATTGGGAGAAAGCTTATGACATGGAGAATGATGTGCAGCAGCAACAG TGA
AA sequence Show only first row Show all	>Lus10034470 pacid=23176035 polypeptide=Lus10034470 locus=Lus10034470.g ID=Lus10034470.BGIv1.0 annot-version=v1.0 MSSQPRGDRRDRSRSSSQTGQQRWIPRGSAPSTVSVNNNTPPATFNPSYVDGRGEQSNANPNPVPREPRPKGASNAPRSYVVGRPVNNHRRDKQREKGDT HAVKELVDPNLPQLVQEIREKLANGTAECMICYDMVRRSAPIWSCSSCYSIFHLHCIKKWVRAPTSIDMSADKNQGFNWRCPGCQYVQLTPLKEIKYLCF CGKRTDPPSDLYLTPHSCGEPCGKPLERHLPGNLETKEDSCPHNCVLQCHPGPCPPCKSFAPPCLCPCGKKTITTRCSDRQSVLTCGQQCEKLLDCQRHR CERMCHVGPCDPCEILVTASCFCKKKQEVVSCGDMSVKGEVNVKDGVFSCNSSCGKLLACGNHECDEVCHPGPCGSCALMPGRVKSCYCGKTSLQEERKS CLDSIPNCSQVCSKLLPCGIHNCENLCHSGDCPPCMVSVSQKCQCGSTSRIVACYQTSAESEKFKCDKPCGRKKNCGRHRCSERCCPLSNPNPVRSEDWD PHFCQMACGKKLRCGQHSCESLCHSGHCPPCLETIFSDLTCACGRTSIPPPLPCGTPPPSCQLPCSVPQPCGHLASHSCHYGDCPPCSVPVAKECVGGHV VLKNIPCGSKDIRCNKLCGKTRQCGLHACGRTCHPAPCDSSGTTGAGVARVSCGQTCGAPRRDCRHTCAALCHPSSPCPDVRCKLTISCSCGRITASVPC DAGGTNAGYSADTVFDASIAHKLPAPLQPVESTGSRIPLGQRKLTCDEECAKSERKRVLADAFDIGTPNFEALHFGENSQVTELIVDLYRRDPKWVIGVE ERCKYLVLGKSKGTVGGLKVHVFCPMMKDKRDAVRLIAERWKLSINVAGWEPKRFVVLHATPKSRPPSRVICVKGTTTNPHSPAFDPLVDMDPRLVVSFL DLPREADVSSLVLRFGGECELIWLNDKNALAVFSDPARAATALRRLDHASAYYGVAVVLQNTGPGGAWGAMGTSAREGGGVSATLKGASAWKKAVTRVDF WGGEEQRPVSSMDAQSSPWKQKEAAVTASINRWSVLDSESSSSNGASLIGVKKQGGSHSGSGSGSSLLPHDAVVPEGESAEVVDDWEKAYDMENDVQQQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10170		ATNFXL1	NF-X-like 1 (.1)		Lus10034470 [exp]	0	1
AT5G37830		OXP1	oxoprolinase 1 (.1)		Lus10024411 [exp]	1.0	0.9284
AT5G49610			F-box family protein (.1)		Lus10028682 [exp]	2.0	0.9021
AT1G61690			phosphoinositide binding (.1)		Lus10018391 [exp]	3.0	0.8781
AT5G49610			F-box family protein (.1)		Lus10000860 [exp]	16.5	0.8768
AT1G10170		ATNFXL1	NF-X-like 1 (.1)		Lus10025071 [exp]	21.0	0.8002
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10035827 [exp]	23.2	0.8510
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Lus10005111 [exp]	23.6	0.8052
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10029591 [exp]	23.6	0.8514
AT1G26580			unknown protein		Lus10036888 [exp]	25.8	0.8002
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10036609 [exp]	31.7	0.8482

Compare expression of checked genes

Lus10034470 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.