Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16920 171 / 4e-50 UBC23 ,PFU2 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) AT2G33770 78 / 1e-17 ATUBC24, UBC24, PHO2 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025070 [exp] 223 / 1e-68 AT2G16920 1209 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10005854 [exp] 77 / 3e-17 AT2G33770 785 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G136000 [exp] 155 / 8e-45 AT2G16920 1069 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Potri.004G176000 [exp] 142 / 4e-40 AT2G16920 1045 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Potri.004G043500 [exp] 103 / 1e-26 AT2G33770 823 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.011G052600 [exp] 102 / 4e-26 AT2G33770 796 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034471 pacid=23176038 polypeptide=Lus10034471 locus=Lus10034471.g ID=Lus10034471.BGIv1.0 annot-version=v1.0 ATGGATGAAACAGAACAAATACAGGGAATTAATGACGTAAAAGTTGTAGATCGTGGTTTCTTACATGGAGATTATGTTGCTTCCGCTTCTGACCCGACCG GACAAGTAGGAGTTGTGGTGGATGTCAGTATCTCTGTTGATTTGCTAGCTCCTGATGGCTCTTTAGTTAAGGATGTATCATCTAAAGACTTGAAGCGTGT GAGGGAGTTTGTTGTTGGTGATCATGTACTACTTGGTCCTTGGCTTGGTAGAGTTGATGACGTCATGGATAATGTGACCGTTTTAGTGGATGATGGTTCA ATCTGCAAAGTACTAGGTGCTGAACCCCTACGTCTTAAACCAATCTCCAAAAGTTTCTTCGAGGAGGGAGATCATTCCCTTACTATCCTGGGCAGCGTGT GA
AA sequence Show only first row Show all	>Lus10034471 pacid=23176038 polypeptide=Lus10034471 locus=Lus10034471.g ID=Lus10034471.BGIv1.0 annot-version=v1.0 MDETEQIQGINDVKVVDRGFLHGDYVASASDPTGQVGVVVDVSISVDLLAPDGSLVKDVSSKDLKRVREFVVGDHVLLGPWLGRVDDVMDNVTVLVDDGS ICKVLGAEPLRLKPISKSFFEEGDHSLTILGSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10034471 [exp]	0	1
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Lus10037556 [exp]	3.9	0.8321
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Lus10004776 [exp]	13.3	0.8092
AT3G47890			Ubiquitin carboxyl-terminal hy...		Lus10042186 [exp]	16.6	0.8096
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10009247 [exp]	17.7	0.8052
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10026336 [exp]	18.7	0.8112
AT4G32640			Sec23/Sec24 protein transport ...		Lus10004122 [exp]	29.3	0.8069
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Lus10033345 [exp]	30.9	0.7621
AT2G27900			unknown protein		Lus10000865 [exp]	31.8	0.7943
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10024182 [exp]	32.3	0.7962
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10011467 [exp]	33.2	0.8032

Compare expression of checked genes

Lus10034471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.