Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16920 781 / 0 UBC23 ,PFU2 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) AT2G33770 383 / 2e-119 ATUBC24, UBC24, PHO2 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) AT1G53025 229 / 1e-65 Ubiquitin-conjugating enzyme family protein (.1) AT3G15355 227 / 2e-64 UBC25 ,PFU1 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) AT1G53023 203 / 5e-59 Ubiquitin-conjugating enzyme family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025070 [exp] 1408 / 0 AT2G16920 1209 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10005854 [exp] 330 / 4e-100 AT2G33770 785 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Lus10001214 [exp] 319 / 6e-99 AT2G33770 508 / 9e-171 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Lus10039831 [exp] 228 / 5e-66 AT3G15355 335 / 6e-110 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Lus10018596 [exp] 219 / 4e-63 AT3G15355 339 / 3e-111 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Lus10028151 [exp] 220 / 1e-62 AT1G53025 388 / 2e-129 Ubiquitin-conjugating enzyme family protein (.1) Lus10037778 [exp] 209 / 1e-60 AT2G16920 256 / 9e-81 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10042852 [exp] 187 / 3e-51 AT1G53025 318 / 5e-103 Ubiquitin-conjugating enzyme family protein (.1) Lus10016921 [exp] 178 / 7e-50 AT2G16920 235 / 3e-70 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G136000 [exp] 893 / 0 AT2G16920 1069 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Potri.004G176000 [exp] 885 / 0 AT2G16920 1045 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Potri.011G052600 [exp] 390 / 3e-122 AT2G33770 796 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.004G043500 [exp] 375 / 2e-116 AT2G33770 823 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.001G400300 [exp] 236 / 3e-67 AT3G15355 383 / 5e-125 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.013G130800 [exp] 232 / 5e-67 AT3G15355 334 / 1e-107 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.011G118800 [exp] 233 / 5e-66 AT3G15355 411 / 1e-135 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.010G146500 [exp] 209 / 2e-60 AT2G33770 255 / 3e-77 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.008G104400 [exp] 206 / 5e-59 AT3G15355 267 / 7e-84 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.013G108500 [exp] 92 / 5e-20 AT2G16920 152 / 9e-41 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10034472 pacid=23175968 polypeptide=Lus10034472 locus=Lus10034472.g ID=Lus10034472.BGIv1.0 annot-version=v1.0 ATGGCTCCTGCTGAAGAGCAGAACCCTAAAAATTTGAAACTGCTATCTTCCTTTGCACATGCCAATTGGCAAGTAGGAGACTGGTGTCAAGTTCCTCCAA CTGTTCTAAAATCATCTTCCATCAGTCTAGGTAGTGAGTTATCCAATTTAGGACTATGTGATCCAATGAAAGATACTTTGGTATCTAGGCAGGTGGGAAA TGATTGTGATCCCGATGAGGTTGGACTAGAGGAATTGGATGAGAATAAAGAAGCCACATGCATTGATCCCGAGGTAGTTCCTATTGGAAATAAAGTTAAA ATTAGAGGTAAAGACTATAACGAATCAAACTCATGCAGCAGTTCTACATCTGCTTCAAAGGAGCCAGCACATGAAACTTGGCCTCTTCACCGGAAAAAGA TTCGTAAAGTTGTAATTAGGAAGCAAAAGAAGCCTCGGAAAAAGGAGGAAAACTTTGAAAGGGCACTTCTTATTTACAATTCAAGGACGAGTGTTGATGT GGCATGGCAGGATGGAACTGTAGAACGTGGACTGGAGTCAACAAAGTTAATTCCAATTGATAGTCCTGGTGATCATGAATTTGTCTCCGAACAGTATGTG GTGGAAAAGGCATCTGATGATACTGATAATTCTTCTGAAGTAAGGCGAGTTGGAGTCGTGAAAAGTGTCAATGCAAAGGAACGAACAGCTTGTGTGAGGT GGTTAAAGCCAGTTGTGAGGGCTGAAGATCCTCGTGAATTTGACAGGGAGGAGATCGTAAGTGTTTATGAGCTCGAGGGGCATGCTGATTATGACTACTC TTACGGAGATGTGGTTGTCAGGCTGTCCCCAGTTTCAGTTTCTGCTCAAACAATCCCTGATCAGGAGTACCTTCAGGAGCCAAAGCAGCCAAATTTGATG GATGATGCCGAGGCTACTGAAAATGCCCCACTGTGTAAGAATTCAGAGGATGCACCTTGGGAAGAACCCAGTATGGACGGCTCAGATCTCTCTTGGGTTG GGAATATAACTGGCCTTATCAACGGGGATATTGAAGTGACATGGGCTGACGGAATGGTCTCTACGGTTGGACCTCAAGCAATTTTTGTAGTTGGTCGCGA TGAAGACGATGAGTCCATTGCTGTTGGTAGTGAATTAAGTGACGATGCTGCTAGTTGGGAAACTGTTAATGATGATGAAGATGATGATGACATGGATGCT CGTGAGAAATTTCAAGAGAATCTACTGTTGCAAAACGCCACTGACGTGAACTCTGAGGCGGAGGGTAGCATAGAGAACAATAATGGCAGCAGAAGTCCAG CAGTTTCATTATCCTTGGCTGCTTTTGGCTTTGTTACAAGATTGGCCACTGGAATATTTTCGCGTGGGCGAAAACACTCAGATGCAGATCTATTGGACAA TGGAAGCGAATCTGAATCTCAGAGAATTGTATCTGCCACTGAAGAAAGAGATCATATTGACTTTTCTGGCTCTCAGAAGTCGCATGTTTTCGATCCTGAA AGTCTTATTGAGAAGGAGGAAGAAAATGGGGATCTAGAAGTTGCTGCATCATCAGGTGATGCACAACCTTCTGACGAATTGAAGGTCGATAACTCAAATA CAGCATTTCATGTCCAGGGTGCTACAAGCTCATTCAAACGGTTTGATTCAACGAAAGATCCCTTGGACCATTATTATGTGGGTTCAGTTGGACAGATTAG CAACAGCCGGAAGTGGTTAAGGAAGGTACAACAAGATTGGAACATTCTTCAGAATAACCTGCCTGATGGTATCTATGTAAGAGTTTACGAAGATCGAATG GATCTTTTGAGGGCGGTGATAGTTGGTGCATATGGAACCCCTTACCAAGATGGGTTATTCTTCTTCGATTTCCTCCTTCCGCCAGAGTACCCGGATGCTC CACCGTCAGCATACTATCACTCTGGTGGTTGGCGAATAAATCCTAATCTGTACGAGGAGGGCAAGGTTTGCCTTAGTCTTTTGAACACTTGGACAGGCAG AGGGAACGAAGTTTGGGATCCGACATCTTCTAGCATTCTGCAAGTCCTAGTTTCGCTTCAAGGGCTGGTACTGAATTCGAGACCTTATTTCAACGAAGCT GGATATGACAAACAAGTCGGGACTGCTGAAGGCGAAAAGAACTCACTTTCATACAACGAGAACACATTCTTGCTAAACTGTAAGACCATGATGTATCTCA TTCGAAGGCCTCCCAAGGATTTTGAGGAACTTGTTAAAGAGCATTTCAAGAAGCGAGGTGCCTACATTCTCAAGGCCTGTGATGCATACATGAAAGGAAA TTTAATCGGCTCTCTGAAGATTGATGCATCGGGAACCGAGGATGCTAGCTCGAATTTAACCTCGGTTGGTTTCAAGTTGATGCTAGCCAAGATTGTGCCA AAACTATATGCATCGCTGAACGAAATCGGAGCTGATTGTCAAGAGTATAACCATCTGCTACAGCAGTTGTAG
AA sequence Show only first row Show all	>Lus10034472 pacid=23175968 polypeptide=Lus10034472 locus=Lus10034472.g ID=Lus10034472.BGIv1.0 annot-version=v1.0 MAPAEEQNPKNLKLLSSFAHANWQVGDWCQVPPTVLKSSSISLGSELSNLGLCDPMKDTLVSRQVGNDCDPDEVGLEELDENKEATCIDPEVVPIGNKVK IRGKDYNESNSCSSSTSASKEPAHETWPLHRKKIRKVVIRKQKKPRKKEENFERALLIYNSRTSVDVAWQDGTVERGLESTKLIPIDSPGDHEFVSEQYV VEKASDDTDNSSEVRRVGVVKSVNAKERTACVRWLKPVVRAEDPREFDREEIVSVYELEGHADYDYSYGDVVVRLSPVSVSAQTIPDQEYLQEPKQPNLM DDAEATENAPLCKNSEDAPWEEPSMDGSDLSWVGNITGLINGDIEVTWADGMVSTVGPQAIFVVGRDEDDESIAVGSELSDDAASWETVNDDEDDDDMDA REKFQENLLLQNATDVNSEAEGSIENNNGSRSPAVSLSLAAFGFVTRLATGIFSRGRKHSDADLLDNGSESESQRIVSATEERDHIDFSGSQKSHVFDPE SLIEKEEENGDLEVAASSGDAQPSDELKVDNSNTAFHVQGATSSFKRFDSTKDPLDHYYVGSVGQISNSRKWLRKVQQDWNILQNNLPDGIYVRVYEDRM DLLRAVIVGAYGTPYQDGLFFFDFLLPPEYPDAPPSAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDPTSSSILQVLVSLQGLVLNSRPYFNEA GYDKQVGTAEGEKNSLSYNENTFLLNCKTMMYLIRRPPKDFEELVKEHFKKRGAYILKACDAYMKGNLIGSLKIDASGTEDASSNLTSVGFKLMLAKIVP KLYASLNEIGADCQEYNHLLQQL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10034472 [exp]	0	1
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10033981 [exp]	3.5	0.8293
AT3G24180			Beta-glucosidase, GBA2 type fa...		Lus10000757 [exp]	7.7	0.7963
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10024183 [exp]	8.2	0.8153
AT3G23090			TPX2 (targeting protein for Xk...		Lus10021223 [exp]	9.8	0.8016
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10018006 [exp]	12.7	0.7790
AT4G35830		ACO1	aconitase 1 (.1.2)		Lus10028405 [exp]	14.3	0.7558
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10018007 [exp]	14.8	0.7703
AT1G10750			Protein of Unknown Function (D...		Lus10013046 [exp]	19.7	0.7436
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10005390 [exp]	22.0	0.7956
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030456 [exp]	25.0	0.7300

Compare expression of checked genes

Lus10034472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.