Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20940 135 / 1e-41 Protein of unknown function (DUF1279) (.1) AT2G27290 42 / 3e-05 Protein of unknown function (DUF1279) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025069 [exp] 270 / 7e-94 AT2G20940 134 / 4e-40 Protein of unknown function (DUF1279) (.1) Lus10013320 [exp] 38 / 0.0007 AT2G27290 186 / 2e-60 Protein of unknown function (DUF1279) (.1) Lus10005208 [exp] 38 / 0.0008 AT2G27290 185 / 7e-60 Protein of unknown function (DUF1279) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G136100 [exp] 169 / 7e-55 AT2G20940 155 / 2e-49 Protein of unknown function (DUF1279) (.1) Potri.009G161800 [exp] 40 / 0.0001 AT2G27290 153 / 6e-47 Protein of unknown function (DUF1279) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06916 [flax] [poplar] DUF1279 Protein of unknown function (DUF1279)
Representative CDS sequence Show only first row Show all	>Lus10034474 pacid=23176129 polypeptide=Lus10034474 locus=Lus10034474.g ID=Lus10034474.BGIv1.0 annot-version=v1.0 ATGGTGGGCGGTCGATTCAGGGAGCTACTGAAGAAATACGGCAAGGTGGCGTTGGGGGTTCACTTCTCCGTCTCAGCCGCTTCGATCTCCGGCCTTTATG TCGCCATAAGGAACAATGTCGACGTGGAATCGGTCTTCGACAAGCTGCACCTCCCCGGCCTGTCTTCCAACAAAGATGGAGAGTCCTCCACCGTCGCCGA TCCGAACCAGCAAGCTCCTCCGGTGGAAGGAGCTTCGATTGAAGAGAAGACGAAGAGCGGCAGGAATCGGGTGGCGGAGCTAGCTGCTTCGAGCGGCGGC GCGTTTGCTGTGGCTCTGCTGTTCAACAAGGCTCTGTTCCCGATTAGGGTGCCGATCACGATCGCGCTCACTCCTGCGGTGGCGAAGGCTTTGGCCAGGA GAGGACTGATTCGAAGTGTATGA
AA sequence Show only first row Show all	>Lus10034474 pacid=23176129 polypeptide=Lus10034474 locus=Lus10034474.g ID=Lus10034474.BGIv1.0 annot-version=v1.0 MVGGRFRELLKKYGKVALGVHFSVSAASISGLYVAIRNNVDVESVFDKLHLPGLSSNKDGESSTVADPNQQAPPVEGASIEEKTKSGRNRVAELAASSGG AFAVALLFNKALFPIRVPITIALTPAVAKALARRGLIRSV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20940			Protein of unknown function (D...		Lus10034474 [exp]	0	1
AT4G18372			Small nuclear ribonucleoprotei...		Lus10000241 [exp]	1.0	0.8220
AT5G62030			diphthamide synthesis DPH2 fam...		Lus10039108 [exp]	6.0	0.7749
AT5G41685			Mitochondrial outer membrane t...		Lus10001641 [exp]	7.9	0.7575
AT3G59520		ATRBL13	RHOMBOID-like protein 13 (.1)		Lus10008156 [exp]	8.8	0.7710
AT2G36930	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10023928 [exp]	10.8	0.7882
AT3G20890			RNA-binding (RRM/RBD/RNP motif...		Lus10030139 [exp]	11.4	0.7713
AT3G21740		APO4	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10039659 [exp]	12.0	0.7956
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10011187 [exp]	18.3	0.7593
AT3G10090			Nucleic acid-binding, OB-fold-...		Lus10017293 [exp]	19.0	0.7096
AT1G05600		EMB3101	EMBRYO DEFECTIVE 3101, Tetratr...		Lus10030200 [exp]	27.1	0.7198

Compare expression of checked genes

Lus10034474 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.