Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21100 219 / 5e-73 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G22900 160 / 7e-50 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42510 157 / 6e-49 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G65870 155 / 7e-48 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42500 154 / 8e-48 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G58170 140 / 2e-42 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G49040 135 / 3e-40 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G55210 134 / 1e-39 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) AT2G21110 125 / 2e-36 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G13650 125 / 4e-36 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025067 [exp] 329 / 1e-116 AT2G21100 214 / 3e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025064 [exp] 233 / 1e-78 AT2G21100 197 / 9e-65 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034479 [exp] 230 / 1e-77 AT2G21100 189 / 9e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034478 [exp] 228 / 6e-76 AT2G21100 191 / 1e-61 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025065 [exp] 224 / 2e-74 AT2G21100 199 / 1e-64 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034482 [exp] 212 / 3e-69 AT2G21100 182 / 8e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10027834 [exp] 211 / 3e-69 AT2G21100 182 / 5e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10005062 [exp] 209 / 3e-68 AT2G21100 184 / 7e-59 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025063 [exp] 209 / 4e-68 AT2G21100 183 / 4e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G131000 [exp] 217 / 2e-72 AT2G21100 236 / 4e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G061000 [exp] 178 / 6e-57 AT1G58170 214 / 2e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G214600 [exp] 172 / 6e-55 AT2G21100 164 / 6e-52 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.006G195300 [exp] 169 / 1e-53 AT5G49040 202 / 2e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216400 [exp] 163 / 5e-51 AT1G58170 225 / 1e-75 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G023800 [exp] 162 / 8e-51 AT3G13650 171 / 2e-54 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216300 [exp] 161 / 3e-50 AT1G55210 221 / 5e-74 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.016G060900 [exp] 160 / 1e-49 AT1G58170 197 / 1e-64 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060700 [exp] 158 / 5e-49 AT1G65870 186 / 2e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G023600 [exp] 155 / 6e-48 AT5G49040 146 / 1e-44 Disease resistance-responsive (dirigent-like protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [flax] [poplar] AOC_barrel PF03018 [flax] [poplar] Dirigent Dirigent-like protein
Representative CDS sequence Show only first row Show all	>Lus10034476 pacid=23176031 polypeptide=Lus10034476 locus=Lus10034476.g ID=Lus10034476.BGIv1.0 annot-version=v1.0 ATGTCGTCGTCGCTCTTCGTCGTAACGTTCCTCCTCCTCTCCGCGGCGGTTTCTGGCCACAACAAAATATCTCCATCAGCGTCGTCGTCGGTCAAGTGGG CGAAGAGGCTCGAGTCTTGCGAACCGGGCAAGGAGACGGTAACCAAACTCCAATTCTACTTCCATGACATCGTCACAGGGAATAACCCGACCGCAGTGAG GGTGGCTCAGGCGCCCGGAACGGACAAGTCGCCGACGTTGTTCGGGGCCATTTTGATGGCGGACGACCCTCTTACGGAGACTGCAGACCCGACTTCCAAG CTGATTGGGCGGGCCCAGGGGCTTTATGGGTCCGCGTCGCAGAATGATCTGGGCTTGATTATGGCGCTGGGCTTCAGCTTTCTTGATGGGCCTTATAATG GGAGTACGATAAGCGTGGTCGGGAAAAATCCGGCGATGAATCCGGACAGGGAGCTGCCGGTTGTCGGCGGCACGGGGGTTTTCAGGATGGCACGTGGGTA CGCGCTGCTGAAAACGTTGTCGCTTACTCAGGGCGGGGATGCGGTGGTTCATTACAACGTTACCGTGCATACGCCCCCGGCTGATTGTCACTGA
AA sequence Show only first row Show all	>Lus10034476 pacid=23176031 polypeptide=Lus10034476 locus=Lus10034476.g ID=Lus10034476.BGIv1.0 annot-version=v1.0 MSSSLFVVTFLLLSAAVSGHNKISPSASSSVKWAKRLESCEPGKETVTKLQFYFHDIVTGNNPTAVRVAQAPGTDKSPTLFGAILMADDPLTETADPTSK LIGRAQGLYGSASQNDLGLIMALGFSFLDGPYNGSTISVVGKNPAMNPDRELPVVGGTGVFRMARGYALLKTLSLTQGGDAVVHYNVTVHTPPADCH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21100			Disease resistance-responsive ...		Lus10034476 [exp]	0	1
					Lus10014650 [exp]	6.4	0.5806
AT5G51490			Plant invertase/pectin methyle...		Lus10027204 [exp]	8.1	0.5767
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10021387 [exp]	12.7	0.5670
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10003585 [exp]	14.3	0.5434
AT3G05950			RmlC-like cupins superfamily p...		Lus10035280 [exp]	16.0	0.5434
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10013268 [exp]	17.5	0.5434
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10003345 [exp]	18.9	0.5434
AT4G30590		AtENODL12	early nodulin-like protein 12 ...		Lus10019955 [exp]	19.9	0.5171
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Lus10005476 [exp]	20.0	0.5273
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Lus10016782 [exp]	21.9	0.5159

Compare expression of checked genes

Lus10034476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.