Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34880 259 / 2e-82 Amidase family protein (.1) AT5G07360 57 / 9e-09 Amidase family protein (.1.2) AT3G25660 45 / 9e-05 Amidase family protein (.1) AT5G64440 43 / 0.0003 ATFAAH fatty acid amide hydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025066 [exp] 246 / 6e-77 AT4G34880 484 / 3e-168 Amidase family protein (.1) Lus10002804 [exp] 219 / 6e-66 AT4G34880 257 / 2e-90 Amidase family protein (.1) Lus10027852 [exp] 179 / 2e-51 AT4G34880 489 / 3e-170 Amidase family protein (.1) Lus10002805 [exp] 152 / 6e-42 AT4G34880 454 / 3e-158 Amidase family protein (.1) Lus10027853 [exp] 144 / 5e-38 AT4G34880 462 / 4e-159 Amidase family protein (.1) Lus10027854 [exp] 91 / 9e-23 AT4G34880 104 / 5e-28 Amidase family protein (.1) Lus10020468 [exp] 48 / 1e-05 AT5G64440 781 / 0.0 fatty acid amide hydrolase (.1) Lus10016685 [exp] 47 / 2e-05 AT5G64440 453 / 2e-152 fatty acid amide hydrolase (.1) Lus10032519 [exp] 45 / 5e-05 AT5G07360 847 / 0.0 Amidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G171000 [exp] 192 / 1e-56 AT4G34880 535 / 0.0 Amidase family protein (.1) Potri.004G171300 [exp] 160 / 2e-44 AT4G34880 473 / 5e-164 Amidase family protein (.1) Potri.004G169400 [exp] 155 / 2e-43 AT4G34880 419 / 1e-144 Amidase family protein (.1) Potri.009G130700 [exp] 155 / 2e-42 AT4G34880 528 / 0.0 Amidase family protein (.1) Potri.009G130400 [exp] 144 / 1e-38 AT4G34880 489 / 1e-170 Amidase family protein (.1) Potri.004G169300 [exp] 141 / 2e-37 AT4G34880 493 / 7e-172 Amidase family protein (.1) Potri.009G130500 [exp] 139 / 2e-36 AT4G34880 500 / 2e-174 Amidase family protein (.1) Potri.015G109400 [exp] 52 / 4e-07 AT5G07360 823 / 0.0 Amidase family protein (.1.2) Potri.005G070300 [exp] 50 / 2e-06 AT5G64440 488 / 1e-166 fatty acid amide hydrolase (.1) Potri.007G098600 [exp] 50 / 2e-06 AT5G64440 478 / 2e-162 fatty acid amide hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01425 [flax] [poplar] Amidase Amidase
Representative CDS sequence Show only first row Show all	>Lus10034477 pacid=23175978 polypeptide=Lus10034477 locus=Lus10034477.g ID=Lus10034477.BGIv1.0 annot-version=v1.0 ATGGCTGCCACTCCACTATTCTTCCTACTTCTACTCTTCACTTTCCCATCCAGATTCCACTCCAAACCCACCAACAACAAAATCAACACCACATTACCCC AACTAATTCTAGAAGCCACCATCGACGCCATCCAGCTAGCTTTCGCCAACAACACCCTCACGTCCAAACAACTCGTCCAGTTCTACCTCGACTGGATCGA GAAACACAACGGCCTCCTCAAAGCGGTCATCGAGGTCAACCCAGACACTCTTAGTTTGTCCGAAAAGACAGACAGAGAGAGTCGGCTCAAGCTCCCTAGC TCGGGTATTGGGTTACATGGAATCCCGGTCTTGCTCAAGGACAACATTGCCACCGAAGACAAGCTCAACACCACGGCTGGGTCCTTTGCGCTTTTACGCT TGATCGTTCCTAGGGATGCGGGCGGGGCGAAAAAACCGTTGGATTCGGAGACCGTTGGAGTTGGAATCAAACCTACGGTTGGGTTAACTAGTAAGGCAAG GGTCATCCCAATTTCTCCTAGGCAGGACACAATAGGGCCGATTTGTAGGACAGTGGCCGACGCTACTTACGTACTCGAAGCAATAGCAGGATTCGATCAG AACGATCCTGCTACAACAACCGCCGCAAAGTACATTCCTCTCGGGGGATACAAACAGTTCTCAAGCGAGAGGGGCTCAAGGGGAAAAGGATTGGTTACGT CCATGGTTCGATCTTTGGGAGATGTCATAGCCTTCAACAACAAGTTCGCCAAACTTGAGAAGACCAAGGAGTATGGGCAGGGTATAATGGAGACATCAGA ATGGTTGAATCGGACTAAGGGTGAGTTGAGAGCAGTGTTGCTACATTTGGAAAAACTGGCTGAAATGGGGATTGAGAAGGTCATGAAAGAGCAGAAACTG GATGCATTGGTGGCTGGTCGGGTGGATTTATGTGCAGTTCTGGCAATTGGAGGGTATCCTGGGATTACTGTGCCTGCTGGGTATGATAGCAAAGGAGTCC CCTTTGGGATTTTCTTGGGTGGGTTGAAGGGCTCAGAGCCCAAATTGATTGAGATTGGGTATGGGATTGAACAACAGGCGACTAAGATTAGGAAGCCACC TTCTTTCAGGCCTTGA
AA sequence Show only first row Show all	>Lus10034477 pacid=23175978 polypeptide=Lus10034477 locus=Lus10034477.g ID=Lus10034477.BGIv1.0 annot-version=v1.0 MAATPLFFLLLLFTFPSRFHSKPTNNKINTTLPQLILEATIDAIQLAFANNTLTSKQLVQFYLDWIEKHNGLLKAVIEVNPDTLSLSEKTDRESRLKLPS SGIGLHGIPVLLKDNIATEDKLNTTAGSFALLRLIVPRDAGGAKKPLDSETVGVGIKPTVGLTSKARVIPISPRQDTIGPICRTVADATYVLEAIAGFDQ NDPATTTAAKYIPLGGYKQFSSERGSRGKGLVTSMVRSLGDVIAFNNKFAKLEKTKEYGQGIMETSEWLNRTKGELRAVLLHLEKLAEMGIEKVMKEQKL DALVAGRVDLCAVLAIGGYPGITVPAGYDSKGVPFGIFLGGLKGSEPKLIEIGYGIEQQATKIRKPPSFRP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34880			Amidase family protein (.1)		Lus10034477 [exp]	0	1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10019435 [exp]	5.7	0.6314
AT1G80730	C2H2ZnF	ATZFP1, ZFP1	ARABIDOPSIS THALIANA ZINC-FING...		Lus10008698 [exp]	11.9	0.6157
AT3G09110			Protein of unknown function (D...		Lus10003163 [exp]	15.2	0.5966
AT4G35160			O-methyltransferase family pro...		Lus10018628 [exp]	17.0	0.6382
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10024623 [exp]	20.7	0.5669
AT1G32910			HXXXD-type acyl-transferase fa...		Lus10006333 [exp]	25.3	0.5551
AT5G63180			Pectin lyase-like superfamily ...		Lus10022310 [exp]	41.7	0.5451
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10016266 [exp]	47.4	0.5187
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001036 [exp]	49.6	0.5256
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10033188 [exp]	57.6	0.5268

Compare expression of checked genes

Lus10034477 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.