Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21100 189 / 7e-61 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42510 152 / 4e-46 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42500 149 / 8e-45 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G22900 140 / 1e-41 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G13650 134 / 4e-39 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G65870 134 / 5e-39 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G55210 125 / 8e-36 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) AT1G58170 121 / 5e-34 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G49040 119 / 2e-33 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G13662 115 / 4e-32 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025065 [exp] 394 / 2e-140 AT2G21100 199 / 1e-64 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025064 [exp] 260 / 1e-88 AT2G21100 197 / 9e-65 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034479 [exp] 251 / 4e-85 AT2G21100 189 / 9e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10027834 [exp] 245 / 5e-82 AT2G21100 182 / 5e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10005062 [exp] 238 / 3e-79 AT2G21100 184 / 7e-59 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034482 [exp] 233 / 5e-77 AT2G21100 182 / 8e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025063 [exp] 233 / 5e-77 AT2G21100 183 / 4e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034476 [exp] 231 / 7e-77 AT2G21100 220 / 1e-73 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025067 [exp] 217 / 2e-71 AT2G21100 214 / 3e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G131000 [exp] 191 / 1e-61 AT2G21100 236 / 4e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G023800 [exp] 164 / 4e-51 AT3G13650 171 / 2e-54 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G214600 [exp] 155 / 2e-47 AT2G21100 164 / 6e-52 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G061000 [exp] 153 / 2e-46 AT1G58170 214 / 2e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.006G195300 [exp] 151 / 8e-46 AT5G49040 202 / 2e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216400 [exp] 150 / 2e-45 AT1G58170 225 / 1e-75 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216300 [exp] 150 / 3e-45 AT1G55210 221 / 5e-74 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.001G023600 [exp] 147 / 2e-44 AT5G49040 146 / 1e-44 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G009100 [exp] 145 / 3e-43 AT1G58170 238 / 1e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060900 [exp] 143 / 2e-42 AT1G58170 197 / 1e-64 Disease resistance-responsive (dirigent-like protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [flax] [poplar] AOC_barrel PF03018 [flax] [poplar] Dirigent Dirigent-like protein
Representative CDS sequence Show only first row Show all	>Lus10034478 pacid=23175876 polypeptide=Lus10034478 locus=Lus10034478.g ID=Lus10034478.BGIv1.0 annot-version=v1.0 ATGATGAGGTTATGTTGGGCTATTTTAGTAATCTCCTTGGCCGTAACCGAGCCGTCAGCAGCCCAGTCGGTCAACTGGGCCAAGAGGGTCGACTCTGGAA ACGGTCCAGATGCGGTCACAAACATCCAATTCTACTTCCACGACATAGTAAGTGGGAGCAACCCAACCGCTGAGAAGGTGGTCGAACCGGTTTCCGGATC ATCCACGGTTTTCGGCCAAATCAACATAGCCGACGACCCACTGACCGAGACCTCCGACCCGAAATCCAAGCTCGTAGGCAGGGCCCAGGGGCTCTACGGT TTTGCAAGCGAGACAGACATGGCTCTGCTAATGGTTATGAGCTACGGGTTCACCGACGGGCCCTATAAAGGTAGCTCGCTCAGCATCATGGGCAAGAACC AGGCCATGAACCCGACGCGGGAGCTGCCTGTTCTGGGCGGCACGGGCCTGTTCAGGATGGCTCGTGGGTACGCGCTCATGAAGACGGTGTCGTTAAGTTC GGCAGGAGATGCTGTCGTGCATTATAATGTGACGGTGCATGCCCCGGCGGGCAATGAAGCCGCCCCGGCCTCGACTTCTTCGGTAAGTCGCGGTGGCGCT GCCACTGGCTCGCCGAATTCTTCGTCGGCGTCGTCTTCTGCTTCAACTCCGGTGATTTTGCGTGGAAAACAATGGGTCGTTAGTGCTTTGATGGCTTGTA CCGCTTTCATTTGTTTATCGTCATATGTTCTGTAA
AA sequence Show only first row Show all	>Lus10034478 pacid=23175876 polypeptide=Lus10034478 locus=Lus10034478.g ID=Lus10034478.BGIv1.0 annot-version=v1.0 MMRLCWAILVISLAVTEPSAAQSVNWAKRVDSGNGPDAVTNIQFYFHDIVSGSNPTAEKVVEPVSGSSTVFGQINIADDPLTETSDPKSKLVGRAQGLYG FASETDMALLMVMSYGFTDGPYKGSSLSIMGKNQAMNPTRELPVLGGTGLFRMARGYALMKTVSLSSAGDAVVHYNVTVHAPAGNEAAPASTSSVSRGGA ATGSPNSSSASSSASTPVILRGKQWVVSALMACTAFICLSSYVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21100			Disease resistance-responsive ...		Lus10034478 [exp]	0	1
AT3G56230			BTB/POZ domain-containing prot...		Lus10010216 [exp]	1.0	0.9592
AT3G18180			Glycosyltransferase family 61 ...		Lus10036003 [exp]	2.4	0.9548
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010045 [exp]	3.9	0.9487
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10031933 [exp]	4.4	0.9239
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Lus10009029 [exp]	5.0	0.9185
AT2G37440			DNAse I-like superfamily prote...		Lus10025305 [exp]	7.0	0.9034
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10031859 [exp]	7.5	0.9364
AT2G16750			Protein kinase protein with ad...		Lus10019787 [exp]	7.9	0.9394
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10029585 [exp]	8.0	0.9454
AT3G26590			MATE efflux family protein (.1...		Lus10036854 [exp]	8.1	0.9307

Compare expression of checked genes

Lus10034478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.