Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21100 189 / 1e-61 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42510 156 / 8e-49 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42500 145 / 2e-44 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G22900 138 / 1e-41 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G55210 135 / 2e-40 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) AT1G58170 134 / 4e-40 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G13650 133 / 1e-39 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G65870 132 / 3e-39 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G13662 131 / 5e-39 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G49040 131 / 5e-39 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025064 [exp] 332 / 2e-118 AT2G21100 197 / 9e-65 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025065 [exp] 252 / 7e-86 AT2G21100 199 / 1e-64 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034478 [exp] 250 / 5e-85 AT2G21100 191 / 1e-61 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10027834 [exp] 232 / 3e-78 AT2G21100 182 / 5e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034476 [exp] 230 / 1e-77 AT2G21100 220 / 1e-73 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034482 [exp] 228 / 3e-76 AT2G21100 182 / 8e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025063 [exp] 226 / 3e-75 AT2G21100 183 / 4e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10005062 [exp] 225 / 5e-75 AT2G21100 184 / 7e-59 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025067 [exp] 214 / 2e-71 AT2G21100 214 / 3e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G131000 [exp] 196 / 2e-64 AT2G21100 236 / 4e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G023800 [exp] 163 / 1e-51 AT3G13650 171 / 2e-54 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G061000 [exp] 160 / 3e-50 AT1G58170 214 / 2e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.006G195300 [exp] 157 / 4e-49 AT5G49040 202 / 2e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216300 [exp] 157 / 5e-49 AT1G55210 221 / 5e-74 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.001G214600 [exp] 156 / 8e-49 AT2G21100 164 / 6e-52 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216400 [exp] 154 / 7e-48 AT1G58170 225 / 1e-75 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060900 [exp] 152 / 3e-47 AT1G58170 197 / 1e-64 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060700 [exp] 150 / 1e-46 AT1G65870 186 / 2e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G009100 [exp] 150 / 2e-46 AT1G58170 238 / 1e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [flax] [poplar] AOC_barrel PF03018 [flax] [poplar] Dirigent Dirigent-like protein
Representative CDS sequence Show only first row Show all	>Lus10034479 pacid=23175992 polypeptide=Lus10034479 locus=Lus10034479.g ID=Lus10034479.BGIv1.0 annot-version=v1.0 ATGTCGACTACACTTCATGCCCAAACACCACCACTCAAATGGGCACAAAGACTGGACTCTGGAACCGGCCTTGAGACCGTAACCAACCTCCAGTTCTACT TCCACGACATCCTGAGCGGGTCCAACCCCACCGCGAAACGAGTAGTCCAACCCATACTTGGTACCACCATCACAACCCTCTTTGGAGCGATTGTAATGGC AGACGATCCTTTGACGGAGACATCAGACATGGGGTCCAAGCTCATCGGTCGAGCCCAAGGAATGTACAGCGCGTCCAGCCAGGAAGATATCGCTCTGTTG ATGGTCATGAGCTACGGGTTCACGGACGGACCTTACAACGGAAGCTCGATTAGCATCATGGGTAAGAACCCGGCCATGAACCCGACAAGGGAGCTCCCCG TTTTGGGCGGCACGGGCGTTTTTAGGATGGCACGTGGGTACGCGGCTATGAAAACGGTGTCGGTTAATGCTGGCGGGGATGCCGTTGTGTTTTATAACGT CACGGTGTACACTCCGGCTTCGAATTAA
AA sequence Show only first row Show all	>Lus10034479 pacid=23175992 polypeptide=Lus10034479 locus=Lus10034479.g ID=Lus10034479.BGIv1.0 annot-version=v1.0 MSTTLHAQTPPLKWAQRLDSGTGLETVTNLQFYFHDILSGSNPTAKRVVQPILGTTITTLFGAIVMADDPLTETSDMGSKLIGRAQGMYSASSQEDIALL MVMSYGFTDGPYNGSSISIMGKNPAMNPTRELPVLGGTGVFRMARGYAAMKTVSVNAGGDAVVFYNVTVYTPASN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21100			Disease resistance-responsive ...		Lus10034479 [exp]	0	1
AT2G30210		LAC3	laccase 3 (.1)		Lus10042249 [exp]	1.0	0.9703
AT2G21100			Disease resistance-responsive ...		Lus10025065 [exp]	2.0	0.9657
AT2G30210		LAC3	laccase 3 (.1)		Lus10026401 [exp]	3.7	0.9360
AT3G08680			Leucine-rich repeat protein ki...		Lus10021383 [exp]	4.2	0.9398
AT3G08680			Leucine-rich repeat protein ki...		Lus10025210 [exp]	4.2	0.9520
AT3G55230			Disease resistance-responsive ...		Lus10003301 [exp]	4.5	0.9511
AT2G34930			disease resistance family prot...		Lus10006948 [exp]	4.7	0.9307
AT4G23740			Leucine-rich repeat protein ki...		Lus10038828 [exp]	5.0	0.9099
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10038392 [exp]	5.1	0.9083
AT3G14470			NB-ARC domain-containing disea...		Lus10042117 [exp]	5.9	0.9454

Compare expression of checked genes

Lus10034479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.